Difference between revisions of "5-NUCLEOTID-RXN"

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(Created page with "Category:reaction == Reaction RXN0-2161 == * direction: ** left-to-right * common-name: ** l-serine:trnasec ligase (amp-forming) * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction RXN3O-581 == * direction: ** left-to-right * common-name: ** inositol phosphoceramide synthase * ec-number: ** [http://enzyme.expasy.org/EC/2...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-2161 ==
+
== Reaction RXN3O-581 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** l-serine:trnasec ligase (amp-forming)
+
** inositol phosphoceramide synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11]
+
** [http://enzyme.expasy.org/EC/2.7.1 ec-2.7.1]
 +
* synonymous:
 +
** phophatidylinositol ceramide phosphoinositol transferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[Alpha-hydroxyphytoceramides]][c] '''+''' 1 [[L-1-phosphatidyl-inositols]][c] '''=>''' 1 [[DIACYLGLYCEROL]][c] '''+''' 1 [[IPC]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07311]]
+
* Gene: [[SJ17261]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14143]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria):
+
* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes):
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42581 42581]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=l-serine:trnasec ligase (amp-forming)}}
+
{{#set: common-name=inositol phosphoceramide synthase}}
−
{{#set: ec-number=ec-6.1.1.11}}
+
{{#set: ec-number=ec-2.7.1}}
−
{{#set: nb gene associated=2}}
+
{{#set: synonymous=phophatidylinositol ceramide phosphoinositol transferase}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb gene associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 15:04, 5 January 2021

Reaction RXN3O-581

  • direction:
    • left-to-right
  • common-name:
    • inositol phosphoceramide synthase
  • ec-number:
  • synonymous:
    • phophatidylinositol ceramide phosphoinositol transferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SPHINGOLIPID-SYN-PWY, sphingolipid biosynthesis (yeast):
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=5-NUCLEOTID-RXN&oldid=63650"