Difference between revisions of "5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13163 RXN-13163] == * direction: ** reversible * common-name: ** at2g43090.1 * ec-number: ** [h...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN] == * direction: ** left-to-right * common-name: ** for...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13163 RXN-13163] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMYLTHFDEFORMYL-RXN FORMYLTHFDEFORMYL-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** at2g43090.1
+
** formyltetrahydrofolate deformylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.33 ec-4.2.1.33]
+
** [http://enzyme.expasy.org/EC/3.5.1.10 ec-3.5.1.10]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-D-THREO-HYDROXY-3-CARBOXY-ISOCAPROATE]][c] '''<=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c]
+
* 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09771]]
+
* Gene: [[SJ15379]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22396]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7909 PWY-7909]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
 +
** '''6''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''10''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19834 19834]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04001 R04001]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00944 R00944]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10679 10679]
+
** [http://www.uniprot.org/uniprot/P37051 P37051]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/Q03432 Q03432]
−
{{#set: common-name=at2g43090.1}}
+
** [http://www.uniprot.org/uniprot/Q9PPC9 Q9PPC9]
−
{{#set: ec-number=ec-4.2.1.33}}
+
** [http://www.uniprot.org/uniprot/Q46339 Q46339]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9X7F7 Q9X7F7]
−
{{#set: nb pathway associated=0}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: common-name=formyltetrahydrofolate deformylase}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: ec-number=ec-3.5.1.10}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:24, 26 August 2019

Reaction FORMYLTHFDEFORMYL-RXN

  • direction:
    • left-to-right
  • common-name:
    • formyltetrahydrofolate deformylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7909, formaldehyde oxidation VII (THF pathway): PWY-7909
    • 3 reactions found over 4 reactions in the full pathway
  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 6 reactions found over 17 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 10 reactions found over 24 reactions in the full pathway
  • PWY-2201, folate transformations I: PWY-2201
    • 9 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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