Difference between revisions of "5.99.1.3-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** reversible * common-name: ** dna topoisomerase ** top...")
(Created page with "Category:reaction == Reaction 5.99.1.3-RXN == * direction: ** reversible * common-name: ** dna topoisomerase type ii (atp-hydrolyzing) ** gyrase * ec-number: ** [http://en...")
 
(7 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
+
== Reaction 5.99.1.3-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** dna topoisomerase
+
** dna topoisomerase type ii (atp-hydrolyzing)
−
** topoisomerase
+
** gyrase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.99.1.2 ec-5.99.1.2]
+
** [http://enzyme.expasy.org/EC/5.99.1.3 ec-5.99.1.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Double-Stranded-DNAs]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[Negatively-super-coiled-DNAs]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ04827]]
+
* Gene: [[SJ18170]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04866]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19269]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ13260]]
+
* Gene: [[SJ15546]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ02796]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16900]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
Line 31: Line 31:
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ04829]]
+
* Gene: [[SJ01869]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19115]]
+
* Gene: [[SJ16049]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02496]]
+
* Gene: [[SJ04867]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04660]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18171]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07018]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18404]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18398]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19844]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07017]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ20812]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07016]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03015]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06656]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06665]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14012]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15546]]
+
* Gene: [[SJ18399]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03059]]
+
* Gene: [[SJ13260]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ13261]]
+
* Gene: [[SJ03059]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19269]]
+
* Gene: [[SJ02796]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17437]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07081]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08240]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
Line 61: Line 105:
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115632
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
+
** [http://www.uniprot.org/uniprot/Q7M3G2 Q7M3G2]
−
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
+
** [http://www.uniprot.org/uniprot/Q02880 Q02880]
−
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
+
** [http://www.uniprot.org/uniprot/P0A0K8 P0A0K8]
−
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
+
** [http://www.uniprot.org/uniprot/P41515 P41515]
−
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
+
** [http://www.uniprot.org/uniprot/P12531 P12531]
−
** [http://www.uniprot.org/uniprot/P47368 P47368]
+
** [http://www.uniprot.org/uniprot/P27570 P27570]
−
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
+
** [http://www.uniprot.org/uniprot/Q03470 Q03470]
−
** [http://www.uniprot.org/uniprot/P43704 P43704]
+
** [http://www.uniprot.org/uniprot/P35810 P35810]
−
** [http://www.uniprot.org/uniprot/P43012 P43012]
+
** [http://www.uniprot.org/uniprot/P43701 P43701]
−
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
+
** [http://www.uniprot.org/uniprot/Q9JX55 Q9JX55]
−
** [http://www.uniprot.org/uniprot/P04786 P04786]
+
** [http://www.uniprot.org/uniprot/Q9CH36 Q9CH36]
−
** [http://www.uniprot.org/uniprot/P13099 P13099]
+
** [http://www.uniprot.org/uniprot/P20831 P20831]
−
** [http://www.uniprot.org/uniprot/P06612 P06612]
+
** [http://www.uniprot.org/uniprot/Q9JTW5 Q9JTW5]
−
** [http://www.uniprot.org/uniprot/P11387 P11387]
+
** [http://www.uniprot.org/uniprot/P33769 P33769]
−
** [http://www.uniprot.org/uniprot/P07799 P07799]
+
** [http://www.uniprot.org/uniprot/P47250 P47250]
−
** [http://www.uniprot.org/uniprot/P93119 P93119]
+
** [http://www.uniprot.org/uniprot/Q59189 Q59189]
−
** [http://www.uniprot.org/uniprot/O13463 O13463]
+
** [http://www.uniprot.org/uniprot/P05652 P05652]
−
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
+
** [http://www.uniprot.org/uniprot/P43700 P43700]
−
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
+
** [http://www.uniprot.org/uniprot/P05653 P05653]
−
** [http://www.uniprot.org/uniprot/P14294 P14294]
+
** [http://www.uniprot.org/uniprot/O87667 O87667]
−
** [http://www.uniprot.org/uniprot/P30181 P30181]
+
** [http://www.uniprot.org/uniprot/Q9CGI5 Q9CGI5]
−
** [http://www.uniprot.org/uniprot/P34185 P34185]
+
** [http://www.uniprot.org/uniprot/P23992 P23992]
−
** [http://www.uniprot.org/uniprot/P30189 P30189]
+
** [http://www.uniprot.org/uniprot/P09176 P09176]
−
** [http://www.uniprot.org/uniprot/P40114 P40114]
+
** [http://www.uniprot.org/uniprot/P06786 P06786]
−
** [http://www.uniprot.org/uniprot/P41511 P41511]
+
** [http://www.uniprot.org/uniprot/P0AES6 P0AES6]
−
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
+
** [http://www.uniprot.org/uniprot/Q00942 Q00942]
−
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
+
** [http://www.uniprot.org/uniprot/P22447 P22447]
−
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
+
** [http://www.uniprot.org/uniprot/P08096 P08096]
−
** [http://www.uniprot.org/uniprot/P41512 P41512]
+
** [http://www.uniprot.org/uniprot/P07065 P07065]
−
** [http://www.uniprot.org/uniprot/O24307 O24307]
+
** [http://www.uniprot.org/uniprot/P0AES4 P0AES4]
−
** [http://www.uniprot.org/uniprot/P71196 P71196]
+
** [http://www.uniprot.org/uniprot/P14829 P14829]
−
** [http://www.uniprot.org/uniprot/O70157 O70157]
+
** [http://www.uniprot.org/uniprot/P77993 P77993]
−
** [http://www.uniprot.org/uniprot/O60126 O60126]
+
** [http://www.uniprot.org/uniprot/P22840 P22840]
−
** [http://www.uniprot.org/uniprot/O61660 O61660]
+
** [http://www.uniprot.org/uniprot/Q01320 Q01320]
 +
** [http://www.uniprot.org/uniprot/P15348 P15348]
 +
** [http://www.uniprot.org/uniprot/P13364 P13364]
 +
** [http://www.uniprot.org/uniprot/P34203 P34203]
 +
** [http://www.uniprot.org/uniprot/P50074 P50074]
 +
** [http://www.uniprot.org/uniprot/P34031 P34031]
 +
** [http://www.uniprot.org/uniprot/Q50404 Q50404]
 +
** [http://www.uniprot.org/uniprot/Q50405 Q50405]
 +
** [http://www.uniprot.org/uniprot/Q50406 Q50406]
 +
** [http://www.uniprot.org/uniprot/P41513 P41513]
 +
** [http://www.uniprot.org/uniprot/Q43906 Q43906]
 +
** [http://www.uniprot.org/uniprot/P30182 P30182]
 +
** [http://www.uniprot.org/uniprot/P37411 P37411]
 +
** [http://www.uniprot.org/uniprot/P0A0L0 P0A0L0]
 +
** [http://www.uniprot.org/uniprot/Q50435 Q50435]
 +
** [http://www.uniprot.org/uniprot/P22446 P22446]
 +
** [http://www.uniprot.org/uniprot/P77966 P77966]
 +
** [http://www.uniprot.org/uniprot/Q48974 Q48974]
 +
** [http://www.uniprot.org/uniprot/Q48995 Q48995]
 +
** [http://www.uniprot.org/uniprot/Q49017 Q49017]
 +
** [http://www.uniprot.org/uniprot/O68071 O68071]
 +
** [http://www.uniprot.org/uniprot/O68140 O68140]
 +
** [http://www.uniprot.org/uniprot/O24308 O24308]
 +
** [http://www.uniprot.org/uniprot/Q57532 Q57532]
 +
** [http://www.uniprot.org/uniprot/O41065 O41065]
 +
** [http://www.uniprot.org/uniprot/Q9ZNN5 Q9ZNN5]
 +
** [http://www.uniprot.org/uniprot/Q9ZNN4 Q9ZNN4]
 +
** [http://www.uniprot.org/uniprot/Q9ZNN3 Q9ZNN3]
 +
** [http://www.uniprot.org/uniprot/Q9ZNN2 Q9ZNN2]
 +
** [http://www.uniprot.org/uniprot/Q9ZNN1 Q9ZNN1]
 +
** [http://www.uniprot.org/uniprot/Q9ZNN0 Q9ZNN0]
 +
** [http://www.uniprot.org/uniprot/O87117 O87117]
 +
** [http://www.uniprot.org/uniprot/Q9WXF4 Q9WXF4]
 +
** [http://www.uniprot.org/uniprot/O50627 O50627]
 +
** [http://www.uniprot.org/uniprot/O50628 O50628]
 +
** [http://www.uniprot.org/uniprot/P94604 P94604]
 +
** [http://www.uniprot.org/uniprot/P94605 P94605]
 +
** [http://www.uniprot.org/uniprot/Q9S5H9 Q9S5H9]
 +
** [http://www.uniprot.org/uniprot/Q9ZNH3 Q9ZNH3]
 +
** [http://www.uniprot.org/uniprot/Q9ZNH2 Q9ZNH2]
 
</div>
 
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=topoisomerase|dna topoisomerase}}
+
{{#set: common-name=gyrase|dna topoisomerase type ii (atp-hydrolyzing)}}
−
{{#set: ec-number=ec-5.99.1.2}}
+
{{#set: ec-number=ec-5.99.1.3}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=28}}
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction 5.99.1.3-RXN

  • direction:
    • reversible
  • common-name:
    • dna topoisomerase type ii (atp-hydrolyzing)
    • gyrase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=5.99.1.3-RXN&oldid=140031"