56-Dihydrouracil17-in-tRNAs

Reaction GAPOXNPHOSPHN-RXN

• direction:
  • reversible
• common-name:
  • glyceraldehyde 3-phosphate dehydrogenase
• ec-number:
  • ec-1.2.1.12

Reaction formula

• 1 GAP[c] + 1 NAD[c] + 1 Pi[c] <=> 1 DPG[c] + 1 NADH[c] + 1 PROTON[c]

Gene(s) associated with this reaction

• Gene: SJ05204
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ07665
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ00348
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
    • Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ05251
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
  • Category: orthology
    • Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
• Gene: SJ14154
  • Category: annotation
    • Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a

Pathway(s)

• GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
  • 12 reactions found over 13 reactions in the full pathway
• P124-PWY, Bifidobacterium shunt: P124-PWY
  • 12 reactions found over 15 reactions in the full pathway
• P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
  • 11 reactions found over 12 reactions in the full pathway
• P122-PWY, heterolactic fermentation: P122-PWY
  • 16 reactions found over 18 reactions in the full pathway
• PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
  • 10 reactions found over 11 reactions in the full pathway
• PWY-1042, glycolysis IV (plant cytosol): PWY-1042
  • 9 reactions found over 10 reactions in the full pathway
• GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
  • 11 reactions found over 12 reactions in the full pathway
• ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
  • 10 reactions found over 11 reactions in the full pathway
• SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
  • 6 reactions found over 7 reactions in the full pathway
• PWY66-399, gluconeogenesis III: PWY66-399
  • 11 reactions found over 12 reactions in the full pathway
• PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
  • 10 reactions found over 8 reactions in the full pathway
• PWY-7003, glycerol degradation to butanol: PWY-7003
  • 8 reactions found over 6 reactions in the full pathway

Reconstruction information

• category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
• category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
• category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
• category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a

External links

• RHEA:
  • 10303
• LIGAND-RXN:
  • R01061
• UNIPROT:
  • P07486
  • P08477
  • P17878
  • Q01651
  • Q27890
  • Q27820
  • Q7M188
  • Q7LZR1
  • Q58546
  • P55971
  • P46795
  • P07487
  • Q01558
  • Q7M187
  • O25902
  • Q9JWT8
  • P29272
  • P47543
  • O83816
  • P20445
  • P26517
  • P09124
  • P00362
  • P00358
  • P00359
  • P00360
  • P00356
  • P0A9B2
  • P0A9B6
  • P17721
  • P04406
  • P17244
  • P04796
  • P19089
  • P26518
  • P26988
  • P04970
  • P17329
  • P17330
  • P17331
  • P08439
  • P00357
  • P16858
  • P26521
  • P26520
  • P26519
  • P04797
  • P25861
  • P00361
  • P09317
  • P22512
  • P22513
  • P10097
  • P17819
  • P28844
  • P08735
  • P09316
  • Q9JX51
  • O67161
  • P44304
  • O34425
  • P64178
  • Q46450
  • P50321
  • P50322
  • P34917
  • P34918
  • Q07234
  • P24748
  • P24746
  • P24749
  • P24751
  • P24750
  • Q60143
  • Q64467
  • P46406
  • Q59800
  • P80534
  • Q9UW96
  • P32809
  • P32810
  • P20287
  • P35143
  • P25858
  • P10618
  • Q7M517
  • Q7M516
  • Q09054
  • Q43247
  • P23722
  • P17729
  • Q01597
  • P32637
  • P29497
  • P32638
  • P32635
  • P32636
  • Q59309
  • P34783
  • Q00584
  • Q42671
  • P34920
  • P39460
  • Q37265
  • Q37264
  • Q01077
  • P54270
  • Q48335
  • Q43833
  • Q59906
  • P46713
  • P75358
  • Q7M2K2
  • Q43359
  • O68075
  • Q08060
  • O49222
  • P34922
  • O04106
  • P49644
  • O32755
  • P34924
  • O59841
  • P78958
  • P54118