Difference between revisions of "6.2.1.34-RXN"

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(Created page with "Category:reaction == Reaction PRPPAMIDOTRANS-RXN == * direction: ** reversible * common-name: ** amidophosphoribosyltransferase ** amidophosphoribosyl transferase * ec-num...")
(Created page with "Category:reaction == Reaction RXN-11586 == * direction: ** left-to-right * common-name: ** 23s rrna m2a2503 methyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PRPPAMIDOTRANS-RXN ==
+
== Reaction RXN-11586 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** amidophosphoribosyltransferase
+
** 23s rrna m2a2503 methyltransferase
−
** amidophosphoribosyl transferase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
+
** [http://enzyme.expasy.org/EC/2.1.1.192 ec-2.1.1.192]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[23S-rRNA-adenine-2503]][c] '''+''' 2 [[Reduced-2Fe-2S-Ferredoxins]][c] '''+''' 2 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[23S-rRNA-2-methyladenine2503]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[MET]][c] '''+''' 2 [[Oxidized-2Fe-2S-Ferredoxins]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04979]]
+
* Gene: [[SJ03258]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ18598]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15928]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ20754]]
+
* Gene: [[SJ00670]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20556]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
 
−
** '''6''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR117028
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42917 42917]
−
* LIGAND-RXN:
+
{{#set: direction=left-to-right}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
+
{{#set: common-name=23s rrna m2a2503 methyltransferase}}
−
* UNIPROT:
+
{{#set: ec-number=ec-2.1.1.192}}
−
** [http://www.uniprot.org/uniprot/P28173 P28173]
+
{{#set: nb gene associated=4}}
−
** [http://www.uniprot.org/uniprot/P35433 P35433]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/O29388 O29388]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O67236 O67236]
 
−
** [http://www.uniprot.org/uniprot/P65829 P65829]
 
−
** [http://www.uniprot.org/uniprot/O57979 O57979]
 
−
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
 
−
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
 
−
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
 
−
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
 
−
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
 
−
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
 
−
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
 
−
** [http://www.uniprot.org/uniprot/O26742 O26742]
 
−
** [http://www.uniprot.org/uniprot/P43854 P43854]
 
−
** [http://www.uniprot.org/uniprot/P35853 P35853]
 
−
** [http://www.uniprot.org/uniprot/P41390 P41390]
 
−
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 
−
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 
−
** [http://www.uniprot.org/uniprot/P04046 P04046]
 
−
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 
−
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 
−
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 
−
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 
−
** [http://www.uniprot.org/uniprot/P52418 P52418]
 
−
** [http://www.uniprot.org/uniprot/P52419 P52419]
 
−
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 
−
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 
−
** [http://www.uniprot.org/uniprot/P00497 P00497]
 
−
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=amidophosphoribosyltransferase|amidophosphoribosyl transferase}}
 
−
{{#set: ec-number=ec-2.4.2.14}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 08:32, 15 March 2021

Reaction RXN-11586

  • direction:
    • left-to-right
  • common-name:
    • 23s rrna m2a2503 methyltransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR117028
  • RHEA:





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