Difference between revisions of "6.2.1.34-RXN"

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(Created page with "Category:reaction == Reaction PREPHENATEDEHYDRAT-RXN == * direction: ** reversible * common-name: ** prephenate dehydratase * ec-number: ** [http://enzyme.expasy.org/EC/4....")
(Created page with "Category:reaction == Reaction PRPPAMIDOTRANS-RXN == * direction: ** reversible * common-name: ** amidophosphoribosyltransferase ** amidophosphoribosyl transferase * ec-num...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PREPHENATEDEHYDRAT-RXN ==
+
== Reaction PRPPAMIDOTRANS-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** prephenate dehydratase
+
** amidophosphoribosyltransferase
 +
** amidophosphoribosyl transferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.51 ec-4.2.1.51]
+
** [http://enzyme.expasy.org/EC/2.4.2.14 ec-2.4.2.14]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PREPHENATE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[GLN]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00045]]
+
* Gene: [[SJ04979]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15928]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20754]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PHESYN]], L-phenylalanine biosynthesis I:
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants):
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21651 21651]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14908 14908]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01373 R01373]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P27603 P27603]
+
** [http://www.uniprot.org/uniprot/P28173 P28173]
−
** [http://www.uniprot.org/uniprot/P43900 P43900]
+
** [http://www.uniprot.org/uniprot/P35433 P35433]
−
** [http://www.uniprot.org/uniprot/P21203 P21203]
+
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
−
** [http://www.uniprot.org/uniprot/Q58054 Q58054]
+
** [http://www.uniprot.org/uniprot/O29388 O29388]
−
** [http://www.uniprot.org/uniprot/Q9CEU2 Q9CEU2]
+
** [http://www.uniprot.org/uniprot/O67236 O67236]
−
** [http://www.uniprot.org/uniprot/Q9PII3 Q9PII3]
+
** [http://www.uniprot.org/uniprot/P65829 P65829]
−
** [http://www.uniprot.org/uniprot/P0A9J8 P0A9J8]
+
** [http://www.uniprot.org/uniprot/O57979 O57979]
−
** [http://www.uniprot.org/uniprot/Q02286 Q02286]
+
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
−
** [http://www.uniprot.org/uniprot/P43909 P43909]
+
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
−
** [http://www.uniprot.org/uniprot/P32452 P32452]
+
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
 +
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
 +
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
 +
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
 +
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
 +
** [http://www.uniprot.org/uniprot/O26742 O26742]
 +
** [http://www.uniprot.org/uniprot/P43854 P43854]
 +
** [http://www.uniprot.org/uniprot/P35853 P35853]
 +
** [http://www.uniprot.org/uniprot/P41390 P41390]
 +
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 +
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 +
** [http://www.uniprot.org/uniprot/P04046 P04046]
 +
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 +
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 +
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 +
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 +
** [http://www.uniprot.org/uniprot/P52418 P52418]
 +
** [http://www.uniprot.org/uniprot/P52419 P52419]
 +
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 +
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 +
** [http://www.uniprot.org/uniprot/P00497 P00497]
 +
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=prephenate dehydratase}}
+
{{#set: common-name=amidophosphoribosyltransferase|amidophosphoribosyl transferase}}
−
{{#set: ec-number=ec-4.2.1.51}}
+
{{#set: ec-number=ec-2.4.2.14}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=4}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:01, 5 January 2021

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • reversible
  • common-name:
    • amidophosphoribosyltransferase
    • amidophosphoribosyl transferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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