Difference between revisions of "6.3.4.9-RXN"

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(Created page with "Category:reaction == Reaction 3.1.26.3-RXN == * direction: ** left-to-right * common-name: ** ribonuclease iii ** ribonuclease * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction TRANSENOYLCOARED-RXN-HEXANOYL-COA/NADP//CPD0-2121/NADPH/PROTON.42. == * direction: ** left-to-right == Reaction formula == * 1.0 [[CPD0-2121]...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3.1.26.3-RXN ==
+
== Reaction TRANSENOYLCOARED-RXN-HEXANOYL-COA/NADP//CPD0-2121/NADPH/PROTON.42. ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** ribonuclease iii
 
−
** ribonuclease
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.1.26.3 ec-3.1.26.3]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[RNASE-III-MRNA-PROCESSING-SUBSTRATE]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[RNASE-III-PROCESSING-PRODUCT-MRNA]][c] '''+''' 2 [[mRNA-Fragments]][c]
+
* 1.0 [[CPD0-2121]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''=>''' 1.0 [[HEXANOYL-COA]][c] '''+''' 1.0 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ17141]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01852]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15619]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08973]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17143]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08968]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PM40 Q9PM40]
 
−
** [http://www.uniprot.org/uniprot/P51833 P51833]
 
−
** [http://www.uniprot.org/uniprot/Q9CHD0 Q9CHD0]
 
−
** [http://www.uniprot.org/uniprot/Q9JVD3 Q9JVD3]
 
−
** [http://www.uniprot.org/uniprot/P44441 P44441]
 
−
** [http://www.uniprot.org/uniprot/P0A7Y0 P0A7Y0]
 
−
** [http://www.uniprot.org/uniprot/P09155 P09155]
 
−
** [http://www.uniprot.org/uniprot/Q52698 Q52698]
 
−
** [http://www.uniprot.org/uniprot/Q49034 Q49034]
 
−
** [http://www.uniprot.org/uniprot/O69469 O69469]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=ribonuclease|ribonuclease iii}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-3.1.26.3}}
 
−
{{#set: nb gene associated=6}}
 
 
{{#set: nb pathway associated=0}}
 
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 15:06, 5 January 2021

Reaction TRANSENOYLCOARED-RXN-HEXANOYL-COA/NADP//CPD0-2121/NADPH/PROTON.42.

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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