Difference between revisions of "6PGLUCONDEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction RXN-16654 == * direction: ** left-to-right * common-name: ** aldehyde dehydrogenase (nad) ** dodecanal dehydrogenase * ec-number: ** [http://...")
(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * direction: ** left-to-right * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] *...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-16654 ==
+
== Reaction 6PGLUCONDEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** aldehyde dehydrogenase (nad)
+
** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
−
** dodecanal dehydrogenase
+
** phosphogluconate dehydrogenase (decarboxylating)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.2.1.3 ec-1.2.1.3]
+
** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
 +
* synonymous:
 +
** 6-phosphogluconic carboxylase
 +
** phosphogluconic acid dehydrogenase
 +
** 6-phosphogluconic dehydrogenase
 +
** 6pgd
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7880]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DODECANOATE]][c] '''+''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* Gene: [[SJ11331]]
+
* Gene: [[SJ16180]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06359]]
+
* Gene: [[SJ15062]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ10107]]
+
* Gene: [[SJ11815]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06456]]
+
* Gene: [[SJ14331]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05897]]
+
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06047]]
+
* Gene: [[SJ06127]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ17249]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ11912]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ09287]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12698]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ06470]]
+
* Gene: [[SJ22264]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00435]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ11330]]
+
* Gene: [[SJ12699]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ22552]]
+
* Gene: [[SJ00878]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
</div>
 
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR120269
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR115649
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P14332 P14332]
 +
** [http://www.uniprot.org/uniprot/P31072 P31072]
 +
** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
 +
** [http://www.uniprot.org/uniprot/P47506 P47506]
 +
** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 +
** [http://www.uniprot.org/uniprot/P43774 P43774]
 +
** [http://www.uniprot.org/uniprot/P12013 P12013]
 +
** [http://www.uniprot.org/uniprot/P41576 P41576]
 +
** [http://www.uniprot.org/uniprot/P00350 P00350]
 +
** [http://www.uniprot.org/uniprot/P00349 P00349]
 +
** [http://www.uniprot.org/uniprot/P52209 P52209]
 +
** [http://www.uniprot.org/uniprot/P41581 P41581]
 +
** [http://www.uniprot.org/uniprot/P41582 P41582]
 +
** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 +
** [http://www.uniprot.org/uniprot/P41583 P41583]
 +
** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 +
** [http://www.uniprot.org/uniprot/P37754 P37754]
 +
** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 +
** [http://www.uniprot.org/uniprot/P52207 P52207]
 +
** [http://www.uniprot.org/uniprot/P70718 P70718]
 +
** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 +
** [http://www.uniprot.org/uniprot/P41572 P41572]
 +
** [http://www.uniprot.org/uniprot/P14062 P14062]
 +
** [http://www.uniprot.org/uniprot/P21577 P21577]
 +
** [http://www.uniprot.org/uniprot/P38720 P38720]
 +
** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 +
** [http://www.uniprot.org/uniprot/P53319 P53319]
 +
** [http://www.uniprot.org/uniprot/O81237 O81237]
 +
** [http://www.uniprot.org/uniprot/O81238 O81238]
 +
** [http://www.uniprot.org/uniprot/O81239 O81239]
 +
** [http://www.uniprot.org/uniprot/O22111 O22111]
 +
** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 +
** [http://www.uniprot.org/uniprot/O32911 O32911]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dodecanal dehydrogenase|aldehyde dehydrogenase (nad)}}
+
{{#set: common-name=phosphogluconate dehydrogenase (decarboxylating)|phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]}}
−
{{#set: ec-number=ec-1.2.1.3}}
+
{{#set: ec-number=ec-1.1.1.351}}
−
{{#set: nb gene associated=12}}
+
{{#set: synonymous=6pgd|phosphogluconic acid dehydrogenase|6-phosphogluconic dehydrogenase|6-phosphogluconic carboxylase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=11}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:24, 18 March 2021

Reaction 6PGLUCONDEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
    • phosphogluconate dehydrogenase (decarboxylating)
  • ec-number:
  • synonymous:
    • 6-phosphogluconic carboxylase
    • phosphogluconic acid dehydrogenase
    • 6-phosphogluconic dehydrogenase
    • 6pgd

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.





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