Difference between revisions of "ACETATE--COA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction ALPHAGALACTOSID-RXN == * direction: ** left-to-right * common-name: ** alpha-galactosidase * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1...")
(Created page with "Category:reaction == Reaction ACETATE--COA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** acetate-coa ligase ** acetyl-coa synthetase (amp-forming) * ec-num...")
 
(One intermediate revision by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ALPHAGALACTOSID-RXN ==
+
== Reaction ACETATE--COA-LIGASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** alpha-galactosidase
+
** acetate-coa ligase
 +
** acetyl-coa synthetase (amp-forming)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.2.1.22 ec-3.2.1.22]
+
** [http://enzyme.expasy.org/EC/6.2.1.1 ec-6.2.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MELIBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[D-galactopyranose]][c] '''+''' 1 [[Glucopyranose]][c]
+
* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03511]]
+
* Gene: [[SJ08601]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02145]]
+
* Gene: [[SJ16901]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02144]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05258]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1301]], melibiose degradation:
+
* [[PWY66-161]], ethanol degradation III:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7118]], chitin deacetylation:
 +
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY66-162]], ethanol degradation IV:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-1313]], acetate conversion to acetyl-CoA:
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6672]], cis-geranyl-CoA degradation:
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-21]], ethanol degradation II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95413
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23176 23176]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01101 R01101]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00235 R00235]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28663 28663]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16551 P16551]
+
** [http://www.uniprot.org/uniprot/P27095 P27095]
−
** [http://www.uniprot.org/uniprot/P27756 P27756]
+
** [http://www.uniprot.org/uniprot/P31638 P31638]
−
** [http://www.uniprot.org/uniprot/P04824 P04824]
+
** [http://www.uniprot.org/uniprot/Q12662 Q12662]
−
** [http://www.uniprot.org/uniprot/P06720 P06720]
+
** [http://www.uniprot.org/uniprot/P28812 P28812]
−
** [http://www.uniprot.org/uniprot/P06280 P06280]
+
** [http://www.uniprot.org/uniprot/P27550 P27550]
−
** [http://www.uniprot.org/uniprot/P51569 P51569]
+
** [http://www.uniprot.org/uniprot/O34613 O34613]
−
** [http://www.uniprot.org/uniprot/O93816 O93816]
+
** [http://www.uniprot.org/uniprot/Q9PMD2 Q9PMD2]
−
** [http://www.uniprot.org/uniprot/Q03647 Q03647]
+
** [http://www.uniprot.org/uniprot/P36333 P36333]
−
** [http://www.uniprot.org/uniprot/P14749 P14749]
+
** [http://www.uniprot.org/uniprot/Q01574 Q01574]
−
** [http://www.uniprot.org/uniprot/P28351 P28351]
+
** [http://www.uniprot.org/uniprot/P39062 P39062]
−
** [http://www.uniprot.org/uniprot/P43467 P43467]
+
** [http://www.uniprot.org/uniprot/Q01576 Q01576]
−
** [http://www.uniprot.org/uniprot/Q99172 Q99172]
+
** [http://www.uniprot.org/uniprot/P52910 P52910]
−
** [http://www.uniprot.org/uniprot/P41945 P41945]
+
** [http://www.uniprot.org/uniprot/Q55404 Q55404]
−
** [http://www.uniprot.org/uniprot/P41946 P41946]
+
** [http://www.uniprot.org/uniprot/P16928 P16928]
−
** [http://www.uniprot.org/uniprot/P41947 P41947]
+
** [http://www.uniprot.org/uniprot/P16929 P16929]
−
** [http://www.uniprot.org/uniprot/Q92457 Q92457]
+
** [http://www.uniprot.org/uniprot/O68040 O68040]
−
** [http://www.uniprot.org/uniprot/Q92456 Q92456]
+
** [http://www.uniprot.org/uniprot/P78773 P78773]
−
** [http://www.uniprot.org/uniprot/Q92451 Q92451]
 
−
** [http://www.uniprot.org/uniprot/O04943 O04943]
 
−
** [http://www.uniprot.org/uniprot/O04944 O04944]
 
−
** [http://www.uniprot.org/uniprot/Q39811 Q39811]
 
−
** [http://www.uniprot.org/uniprot/Q41100 Q41100]
 
−
** [http://www.uniprot.org/uniprot/Q42656 Q42656]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=alpha-galactosidase}}
+
{{#set: common-name=acetate-coa ligase|acetyl-coa synthetase (amp-forming)}}
−
{{#set: ec-number=ec-3.2.1.22}}
+
{{#set: ec-number=ec-6.2.1.1}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction ACETATE--COA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • acetate-coa ligase
    • acetyl-coa synthetase (amp-forming)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-161, ethanol degradation III:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7118, chitin deacetylation:
    • 5 reactions found over 4 reactions in the full pathway
  • PWY66-162, ethanol degradation IV:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-1313, acetate conversion to acetyl-CoA:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-6672, cis-geranyl-CoA degradation:
    • 4 reactions found over 9 reactions in the full pathway
  • PWY66-21, ethanol degradation II:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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