Difference between revisions of "ACETOLACTSYN-RXN"

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(Created page with "Category:reaction == Reaction SELENOCYSTEINE-LYASE-RXN == * direction: ** left-to-right * common-name: ** selenocysteine lyase * ec-number: ** [http://enzyme.expasy.org/EC...")
(Created page with "Category:reaction == Reaction DXS-RXN == * direction: ** left-to-right * common-name: ** 1-deoxy-d-xylulose-5-phosphate synthase ** 1-deoxyxylulose-5-phosphate synthase *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SELENOCYSTEINE-LYASE-RXN ==
+
== Reaction DXS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** selenocysteine lyase
+
** 1-deoxy-d-xylulose-5-phosphate synthase
 +
** 1-deoxyxylulose-5-phosphate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.4.1.16 ec-4.4.1.16]
+
** [http://enzyme.expasy.org/EC/2.2.1.7 ec-2.2.1.7]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Donor-H2]][c] '''+''' 1 [[L-SELENOCYSTEINE]][c] '''=>''' 1 [[Acceptor]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SE-2]][c]
+
* 1 [[GAP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ17324]]
+
* Gene: [[SJ15200]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13485]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12529]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ19133]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03223]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria):
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria):
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II:
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12606 12606]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03599 R03599]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11632 11632]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=selenocysteine lyase}}
+
{{#set: common-name=1-deoxyxylulose-5-phosphate synthase|1-deoxy-d-xylulose-5-phosphate synthase}}
−
{{#set: ec-number=ec-4.4.1.16}}
+
{{#set: ec-number=ec-2.2.1.7}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=5}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:15, 14 January 2021

Reaction DXS-RXN

  • direction:
    • left-to-right
  • common-name:
    • 1-deoxy-d-xylulose-5-phosphate synthase
    • 1-deoxyxylulose-5-phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6891, thiazole biosynthesis II (aerobic bacteria):
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria):
    • 5 reactions found over 7 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I:
    • 3 reactions found over 7 reactions in the full pathway
  • NONMEVIPP-PWY, methylerythritol phosphate pathway I:
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II:
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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