Difference between revisions of "ACETOLACTSYN-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCHOMOSERLYASE-RXN O-SUCCHOMOSERLYASE-RXN] == * direction: ** reversible * common-name: ** cyst...")
(Created page with "Category:reaction == Reaction ACETOLACTSYN-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6] == Reaction formula == * 1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=O-SUCCHOMOSERLYASE-RXN O-SUCCHOMOSERLYASE-RXN] ==
+
== Reaction ACETOLACTSYN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** cystathionine gamma-synthase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.48 ec-2.5.1.48]
+
** [http://enzyme.expasy.org/EC/2.2.1.6 ec-2.2.1.6]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CYS]][c] '''+''' 1 [[O-SUCCINYL-L-HOMOSERINE]][c] '''<=>''' 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[PROTON]][c] '''+''' 2 [[PYRUVATE]][c] '''=>''' 1 [[2-ACETO-LACTATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05357]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20026]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ05358]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=HOMOSER-METSYN-PWY HOMOSER-METSYN-PWY]
+
* [[PWY-6389]], pyruvate fermentation to (S)-acetoin:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-I9]], L-cysteine biosynthesis VI (from L-methionine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-I9 PWY-I9]
+
* [[PWY-5939]], pyruvate fermentation to (R)-acetoin II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5938]], pyruvate fermentation to (R)-acetoin I:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[VALSYN-PWY]], L-valine biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7111]], pyruvate fermentation to isobutanol (engineered):
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-801]], homocysteine and cysteine interconversion: [http://metacyc.org/META/NEW-IMAGE?object=PWY-801 PWY-801]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95271
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20397 20397]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20504 20504]
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25249 25249]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03260 R03260]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00226 R00226]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A4K2 P0A4K2]
+
** [http://www.uniprot.org/uniprot/Q59950 Q59950]
−
** [http://www.uniprot.org/uniprot/Q9CEC6 Q9CEC6]
+
** [http://www.uniprot.org/uniprot/P42463 P42463]
−
** [http://www.uniprot.org/uniprot/P38675 P38675]
+
** [http://www.uniprot.org/uniprot/Q8XAV3 Q8XAV3]
−
** [http://www.uniprot.org/uniprot/P24601 P24601]
+
** [http://www.uniprot.org/uniprot/P27868 P27868]
−
** [http://www.uniprot.org/uniprot/P00935 P00935]
+
** [http://www.uniprot.org/uniprot/P45260 P45260]
−
** [http://www.uniprot.org/uniprot/O04981 O04981]
+
** [http://www.uniprot.org/uniprot/Q57625 Q57625]
−
** [http://www.uniprot.org/uniprot/O04982 O04982]
+
** [http://www.uniprot.org/uniprot/P37251 P37251]
−
** [http://www.uniprot.org/uniprot/O81334 O81334]
+
** [http://www.uniprot.org/uniprot/P45261 P45261]
−
** [http://www.uniprot.org/uniprot/Q79VD9 Q79VD9]
+
** [http://www.uniprot.org/uniprot/O27493 O27493]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/O66759 O66759]
−
{{#set: common-name=cystathionine gamma-synthase}}
+
** [http://www.uniprot.org/uniprot/Q9PHU2 Q9PHU2]
−
{{#set: ec-number=ec-2.5.1.48}}
+
** [http://www.uniprot.org/uniprot/O05031 O05031]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/Q57725 Q57725]
−
{{#set: nb pathway associated=3}}
+
** [http://www.uniprot.org/uniprot/Q9PHU1 Q9PHU1]
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q9JTI1 Q9JTI1]
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q58077 Q58077]
−
{{#set: reconstruction comment=n.a}}
+
** [http://www.uniprot.org/uniprot/O28554 O28554]
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
** [http://www.uniprot.org/uniprot/O53554 O53554]
 +
** [http://www.uniprot.org/uniprot/Q04789 Q04789]
 +
** [http://www.uniprot.org/uniprot/Q9JRF4 Q9JRF4]
 +
** [http://www.uniprot.org/uniprot/Q59272 Q59272]
 +
** [http://www.uniprot.org/uniprot/P27696 P27696]
 +
** [http://www.uniprot.org/uniprot/Q59498 Q59498]
 +
** [http://www.uniprot.org/uniprot/Q9RFQ7 Q9RFQ7]
 +
** [http://www.uniprot.org/uniprot/Q05767 Q05767]
 +
** [http://www.uniprot.org/uniprot/P40811 P40811]
 +
** [http://www.uniprot.org/uniprot/P21622 P21622]
 +
** [http://www.uniprot.org/uniprot/P27818 P27818]
 +
** [http://www.uniprot.org/uniprot/Q41768 Q41768]
 +
** [http://www.uniprot.org/uniprot/Q41769 Q41769]
 +
** [http://www.uniprot.org/uniprot/P69684 P69684]
 +
** [http://www.uniprot.org/uniprot/P27819 P27819]
 +
** [http://www.uniprot.org/uniprot/Q9R586 Q9R586]
 +
** [http://www.uniprot.org/uniprot/Q02137 Q02137]
 +
** [http://www.uniprot.org/uniprot/Q02140 Q02140]
 +
** [http://www.uniprot.org/uniprot/P36620 P36620]
 +
** [http://www.uniprot.org/uniprot/Q42767 Q42767]
 +
** [http://www.uniprot.org/uniprot/Q42768 Q42768]
 +
** [http://www.uniprot.org/uniprot/Q49865 Q49865]
 +
** [http://www.uniprot.org/uniprot/O22547 O22547]
 +
** [http://www.uniprot.org/uniprot/O49229 O49229]
 +
** [http://www.uniprot.org/uniprot/O22578 O22578]
 +
** [http://www.uniprot.org/uniprot/O49210 O49210]
 +
** [http://www.uniprot.org/uniprot/Q60021 Q60021]
 +
** [http://www.uniprot.org/uniprot/P07342 P07342]
 +
** [http://www.uniprot.org/uniprot/P00892 P00892]
 +
** [http://www.uniprot.org/uniprot/P08142 P08142]
 +
** [http://www.uniprot.org/uniprot/P0ADF8 P0ADF8]
 +
** [http://www.uniprot.org/uniprot/P00894 P00894]
 +
** [http://www.uniprot.org/uniprot/P00893 P00893]
 +
** [http://www.uniprot.org/uniprot/P17597 P17597]
 +
** [http://www.uniprot.org/uniprot/P09342 P09342]
 +
** [http://www.uniprot.org/uniprot/P09114 P09114]
 +
** [http://www.uniprot.org/uniprot/P14874 P14874]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: ec-number=ec-2.2.1.6}}
 +
{{#set: nb gene associated=0}}
 +
{{#set: nb pathway associated=5}}
 +
{{#set: reconstruction category=gap-filling}}
 +
{{#set: reconstruction tool=meneco}}
 +
{{#set: reconstruction comment=added for gapfilling}}
 +
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Latest revision as of 11:20, 18 March 2021

Reaction ACETOLACTSYN-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6389, pyruvate fermentation to (S)-acetoin:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5939, pyruvate fermentation to (R)-acetoin II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5938, pyruvate fermentation to (R)-acetoin I:
    • 1 reactions found over 3 reactions in the full pathway
  • VALSYN-PWY, L-valine biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7111, pyruvate fermentation to isobutanol (engineered):
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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