Difference between revisions of "ACID-PHOSPHATASE-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-475...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOACYLCOATHIOL-RXN KETOACYLCOATHIOL-RXN] == * direction: ** left-to-right * common-name: ** acety...")
Line 1: Line 1:
−
[[Category:pathway]]
+
[[Category:reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=HEMESYN2-PWY HEMESYN2-PWY] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOACYLCOATHIOL-RXN KETOACYLCOATHIOL-RXN] ==
−
* taxonomic-range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
+
** left-to-right
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-33630 tax-33630]
 
−
** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
 
 
* common-name:
 
* common-name:
−
** heme b biosynthesis ii (anaerobic)
+
** acetyl-coa c-acyltransferase
−
== Reaction(s) found ==
+
** 3-ketoacyl-coa thiolase
−
* [[HEMN-RXN]]
+
* ec-number:
−
* [[PROTOHEMEFERROCHELAT-RXN]]
+
** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
−
* [[UROGENDECARBOX-RXN]]
+
* synonymous:
−
== Reaction(s) not found ==
+
** beta-ketothiolase
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6259 RXN0-6259]
+
== Reaction formula ==
−
{{#set: taxonomic-range=tax-4751|tax-2|tax-33630}}
+
* 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
−
{{#set: common-name=heme b biosynthesis ii (anaerobic)}}
+
== Gene(s) associated with this reaction  ==
−
{{#set: nb reaction found=3}}
+
* Gene: [[SJ21818]]
−
{{#set: completion rate=0.75}}
+
** Category: [[annotation]]
−
{{#set: nb total reaction=4}}
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ16470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21817]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14898]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09371]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
== Pathway(s) ==
 +
* [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21566 21566]
 +
* PIR:
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAB XURTAB]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAA XURTAA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURT XURT]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUHUAB XUHUAB]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUEC XUEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52165 T52165]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52110 T52110]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07989 T07989]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72532 S72532]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57792 S57792]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36838 S36838]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33637 S33637]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S22784 S22784]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JS0624 JS0624]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64890 H64890]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P77525 P77525]
 +
** [http://www.uniprot.org/uniprot/P28790 P28790]
 +
** [http://www.uniprot.org/uniprot/P27796 P27796]
 +
** [http://www.uniprot.org/uniprot/Q08375 Q08375]
 +
** [http://www.uniprot.org/uniprot/Q05493 Q05493]
 +
** [http://www.uniprot.org/uniprot/Q42918 Q42918]
 +
** [http://www.uniprot.org/uniprot/Q43742 Q43742]
 +
** [http://www.uniprot.org/uniprot/Q56WD9 Q56WD9]
 +
** [http://www.uniprot.org/uniprot/Q570C8 Q570C8]
 +
** [http://www.uniprot.org/uniprot/P21151 P21151]
 +
** [http://www.uniprot.org/uniprot/P09110 P09110]
 +
** [http://www.uniprot.org/uniprot/P13437 P13437]
 +
** [http://www.uniprot.org/uniprot/P21775 P21775]
 +
** [http://www.uniprot.org/uniprot/P07871 P07871]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00391 R00391]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=acetyl-coa c-acyltransferase|3-ketoacyl-coa thiolase}}
 +
{{#set: ec-number=ec-2.3.1.16}}
 +
{{#set: synonymous=beta-ketothiolase}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:32, 27 August 2019

Reaction KETOACYLCOATHIOL-RXN

  • direction:
    • left-to-right
  • common-name:
    • acetyl-coa c-acyltransferase
    • 3-ketoacyl-coa thiolase
  • ec-number:
  • synonymous:
    • beta-ketothiolase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7288, fatty acid β-oxidation (peroxisome, yeast): PWY-7288
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (peroxisome): PWY-5136
    • 5 reactions found over 5 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I: FAO-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (peroxisome): PWY66-391
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ACID-PHOSPHATASE-RXN&oldid=37470"