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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOACYLCOATHIOL-RXN KETOACYLCOATHIOL-RXN] == | + | == Reaction TransportSeed-COB-I-ALAMIN == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| − | * common-name:
| |
| − | ** acetyl-coa c-acyltransferase
| |
| − | ** 3-ketoacyl-coa thiolase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.16 ec-2.3.1.16]
| |
| − | * synonymous:
| |
| − | ** beta-ketothiolase
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[3-KETOACYL-COA]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] | + | * 1.0 [[COB-I-ALAMIN]][e] '''=>''' 1.0 [[COB-I-ALAMIN]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ21818]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ16470]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ21817]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ14898]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ09371]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
| |
| − | ** '''4''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
| |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
| |
| − | ** '''6''' reactions found over '''7''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | + | * category: [[manual]]; source: [[import_from_medium]]; tool: [[curation]]; comment: added to manage seeds from extracellular to cytosol compartment |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21566 21566]
| |
| − | * PIR:
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAB XURTAB]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAA XURTAA]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURT XURT]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUHUAB XUHUAB]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUEC XUEC]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52165 T52165]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52110 T52110]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07989 T07989]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72532 S72532]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57792 S57792]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36838 S36838]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33637 S33637]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S22784 S22784]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JS0624 JS0624]
| |
| − | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64890 H64890]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P77525 P77525]
| |
| − | ** [http://www.uniprot.org/uniprot/P28790 P28790]
| |
| − | ** [http://www.uniprot.org/uniprot/P27796 P27796]
| |
| − | ** [http://www.uniprot.org/uniprot/Q08375 Q08375]
| |
| − | ** [http://www.uniprot.org/uniprot/Q05493 Q05493]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42918 Q42918]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43742 Q43742]
| |
| − | ** [http://www.uniprot.org/uniprot/Q56WD9 Q56WD9]
| |
| − | ** [http://www.uniprot.org/uniprot/Q570C8 Q570C8]
| |
| − | ** [http://www.uniprot.org/uniprot/P21151 P21151]
| |
| − | ** [http://www.uniprot.org/uniprot/P09110 P09110]
| |
| − | ** [http://www.uniprot.org/uniprot/P13437 P13437]
| |
| − | ** [http://www.uniprot.org/uniprot/P21775 P21775]
| |
| − | ** [http://www.uniprot.org/uniprot/P07871 P07871]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00391 R00391]
| |
| − | </div>
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=acetyl-coa c-acyltransferase|3-ketoacyl-coa thiolase}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-2.3.1.16}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: synonymous=beta-ketothiolase}}
| + | {{#set: reconstruction category=manual}} |
| − | {{#set: nb gene associated=5}} | + | {{#set: reconstruction tool=curation}} |
| − | {{#set: nb pathway associated=4}} | + | {{#set: reconstruction comment=added to manage seeds from extracellular to cytosol compartment}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction source=import_from_medium}} |
| − | {{#set: reconstruction tool=pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | |
