Difference between revisions of "ACOACXr"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14919 RXN-14919] == * direction: ** left-to-right * common-name: ** δ-tocotrienol methylt...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == * direction: ** reversible * common-name: ** fumarase c * ec-number: **...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN- | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMHYDR-RXN FUMHYDR-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** fumarase c |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/2.1. | + | ** [http://enzyme.expasy.org/EC/4.2.1.2 ec-4.2.1.2] |
+ | * synonymous: | ||
+ | ** fumarate hydration | ||
+ | ** malate dehydration | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[MAL]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ05770]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ06896]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | ** '''4''' reactions found over '''6''' reactions in the full pathway | + | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] |
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P108-PWY]], pyruvate fermentation to propanoate I: [http://metacyc.org/META/NEW-IMAGE?object=P108-PWY P108-PWY] | ||
+ | ** '''2''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VIII (Helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY] | ||
+ | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561] | ||
+ | ** '''6''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: common-name= | + | * RHEA: |
− | {{#set: ec-number=ec-2.1. | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12463 12463] |
− | {{#set: nb gene associated= | + | * PIR: |
− | {{#set: nb pathway associated= | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47692 A47692] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49760 A49760] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64377 A64377] |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81281 A81281] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81807 A81807] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B44511 B44511] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81862 B81862] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64461 E64461] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64685 E64685] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70896 H70896] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H71462 H71462] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4293 JC4293] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4982 JC4982] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0062 PA0062] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S40448 S40448] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76348 S76348] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T00433 T00433] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07374 T07374] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T41265 T41265] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T43727 T43727] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45269 T45269] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBSC8 UFBSC8] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFBYM UFBYM] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFEC UFEC] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFECAQ UFECAQ] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFHUM UFHUM] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFPG UFPG] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=UFRT UFRT] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q04718 Q04718] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58034 Q58034] | ||
+ | ** [http://www.uniprot.org/uniprot/O69294 O69294] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTE3 Q9JTE3] | ||
+ | ** [http://www.uniprot.org/uniprot/P14407 P14407] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTR0 Q9JTR0] | ||
+ | ** [http://www.uniprot.org/uniprot/Q58690 Q58690] | ||
+ | ** [http://www.uniprot.org/uniprot/O25883 O25883] | ||
+ | ** [http://www.uniprot.org/uniprot/O53446 O53446] | ||
+ | ** [http://www.uniprot.org/uniprot/O84863 O84863] | ||
+ | ** [http://www.uniprot.org/uniprot/Q51404 Q51404] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M4Z3 Q7M4Z3] | ||
+ | ** [http://www.uniprot.org/uniprot/P39461 P39461] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55674 Q55674] | ||
+ | ** [http://www.uniprot.org/uniprot/P93033 P93033] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43180 Q43180] | ||
+ | ** [http://www.uniprot.org/uniprot/O94552 O94552] | ||
+ | ** [http://www.uniprot.org/uniprot/O66271 O66271] | ||
+ | ** [http://www.uniprot.org/uniprot/Q60022 Q60022] | ||
+ | ** [http://www.uniprot.org/uniprot/P07343 P07343] | ||
+ | ** [http://www.uniprot.org/uniprot/P08417 P08417] | ||
+ | ** [http://www.uniprot.org/uniprot/P05042 P05042] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AC33 P0AC33] | ||
+ | ** [http://www.uniprot.org/uniprot/P10173 P10173] | ||
+ | ** [http://www.uniprot.org/uniprot/P14408 P14408] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01082 R01082] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=fumarase c}} | ||
+ | {{#set: ec-number=ec-4.2.1.2}} | ||
+ | {{#set: synonymous=fumarate hydration|malate dehydration}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=16}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction FUMHYDR-RXN
- direction:
- reversible
- common-name:
- fumarase c
- ec-number:
- synonymous:
- fumarate hydration
- malate dehydration
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ05770
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06896
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5690, TCA cycle II (plants and fungi): PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- P108-PWY, pyruvate fermentation to propanoate I: P108-PWY
- 2 reactions found over 7 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- TCA, TCA cycle I (prokaryotic): TCA
- 9 reactions found over 10 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (Helicobacter): REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- P42-PWY, incomplete reductive TCA cycle: P42-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- PWY-561, superpathway of glyoxylate cycle and fatty acid degradation: PWY-561
- 6 reactions found over 4 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-5392, reductive TCA cycle II: PWY-5392
- 6 reactions found over 12 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- PIR:
- UNIPROT:
- LIGAND-RXN: