Difference between revisions of "ACOAD1f"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] == * direction: ** left-to-right * common-name: ** 3-oxo-cis-δ5-dodeceno...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2142 RXN0-2142] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 2-isopropylmalate synthase
+
** 3-oxo-cis-δ5-dodecenoyl-[acp] reductase
 +
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.3.13 ec-2.3.3.13]
+
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[b-Keto-cis-D5-dodecenoyl-ACPs]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[b-Hydroxy-cis-D5-dodecenoyl-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04717]]
+
* Gene: [[SJ04229]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
+
* [[PWY0-862]], (5Z)-dodecenoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-862 PWY0-862]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
+
* [[PWY-7858]], (5Z)-dodecenoate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7858 PWY-7858]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21525 21525]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06208 P06208]
 
−
** [http://www.uniprot.org/uniprot/Q58595 Q58595]
 
−
** [http://www.uniprot.org/uniprot/P09151 P09151]
 
−
** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
 
−
** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
 
−
** [http://www.uniprot.org/uniprot/Q58787 Q58787]
 
−
** [http://www.uniprot.org/uniprot/P94565 P94565]
 
−
** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
 
−
** [http://www.uniprot.org/uniprot/Q02141 Q02141]
 
−
** [http://www.uniprot.org/uniprot/P48575 P48575]
 
−
** [http://www.uniprot.org/uniprot/O86511 O86511]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-isopropylmalate synthase}}
+
{{#set: common-name=3-oxo-cis-δ5-dodecenoyl-[acp] reductase|3-oxoacyl-[acyl-carrier-protein] reductase (nadph)}}
−
{{#set: ec-number=ec-2.3.3.13}}
+
{{#set: ec-number=ec-1.1.1.100}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=2}}
 
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction RXN0-2142

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-cis-δ5-dodecenoyl-[acp] reductase
    • 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-862, (5Z)-dodecenoate biosynthesis I: PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7858, (5Z)-dodecenoate biosynthesis II: PWY-7858
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "3-oxo-cis-δ5-dodecenoyl-[acp] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] reductase (nadph)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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