Difference between revisions of "ACONITATEDEHYDR-RXN"

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(Created page with "Category:reaction == Reaction RXN-13712 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.18.9 ec-1.14.18.9] == Reaction formula == * 1 ...")
(Created page with "Category:reaction == Reaction RXN1F-19 == * direction: ** left-to-right * common-name: ** allene oxide synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.92 ec-4....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13712 ==
+
== Reaction RXN1F-19 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** allene oxide synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.18.9 ec-1.14.18.9]
+
** [http://enzyme.expasy.org/EC/4.2.1.92 ec-4.2.1.92]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[44-DIMETHYL-824-CHOLESTADIENOL]][c] '''+''' 6 [[FERROCYTOCHROME-B5]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''+''' 5 [[PROTON]][c] '''=>''' 1 [[CPD-4577]][c] '''+''' 6 [[FERRICYTOCHROME-B5]][c] '''+''' 4 [[WATER]][c]
+
* 1 [[CPD-725]][c] '''=>''' 1 [[CPD-728]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ07592]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03285]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ20926]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ05110]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ01682]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-735]], jasmonic acid biosynthesis:
 +
** '''16''' reactions found over '''19''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25075 25075]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07509 R07509]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07863 R07863]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33444 33444]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-1.14.18.9}}
+
{{#set: common-name=allene oxide synthase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-4.2.1.92}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=6}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:28, 15 January 2021

Reaction RXN1F-19

  • direction:
    • left-to-right
  • common-name:
    • allene oxide synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-735, jasmonic acid biosynthesis:
    • 16 reactions found over 19 reactions in the full pathway

Reconstruction information

External links





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