Difference between revisions of "ACONITATEHYDR-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RR-BUTANEDIOL-DEHYDROGENASE-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.4 ec-1.1.1.4] == Reaction fo...")
(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * direction: ** reversible * common-name: ** cis-aconitate hydratase ** d-threo-isocitrate hydro-lyase (cis-aconitate-fo...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RR-BUTANEDIOL-DEHYDROGENASE-RXN ==
+
== Reaction ACONITATEHYDR-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/1.1.1.4 ec-1.1.1.4]
+
** cis-aconitate hydratase
 +
** d-threo-isocitrate hydro-lyase (cis-aconitate-forming)
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[BUTANEDIOL]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-10353]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18471]]
−
* Gene: [[SJ06070]]
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07008]]
+
* Gene: [[SJ22396]]
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06326]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17369]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15252]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07148]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02366]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00566]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10445]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14886]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12742]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21294]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22544]]
+
== Pathway(s)  ==
−
** Category: [[orthology]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
* Gene: [[SJ17490]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[PWY-5392]], reductive TCA cycle II:
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** '''6''' reactions found over '''12''' reactions in the full pathway
−
* Gene: [[SJ17359]]
+
* [[PWY-5690]], TCA cycle II (plants and fungi):
−
** Category: [[orthology]]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
−
* Gene: [[SJ16288]]
+
** '''10''' reactions found over '''9''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[TCA]], TCA cycle I (prokaryotic):
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
* Gene: [[SJ16459]]
+
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
−
** Category: [[orthology]]
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY66-398]], TCA cycle III (animals):
−
* Gene: [[SJ06429]]
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[PWY-7254]], TCA cycle VII (acetate-producers):
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* Gene: [[SJ02367]]
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
−
** Category: [[orthology]]
+
** '''10''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
−
* Gene: [[SJ08834]]
+
** '''10''' reactions found over '''8''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* Gene: [[SJ02834]]
+
* [[P23-PWY]], reductive TCA cycle I:
−
** Category: [[orthology]]
+
** '''9''' reactions found over '''12''' reactions in the full pathway
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* [[PWY-7124]], ethene biosynthesis V (engineered):
−
* Gene: [[SJ13981]]
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
** Category: [[orthology]]
+
* [[PWY-6728]], methylaspartate cycle:
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** '''11''' reactions found over '''19''' reactions in the full pathway
−
* Gene: [[SJ14195]]
+
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
−
** Category: [[orthology]]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10466]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20928]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08351]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03320]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02523]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20238]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15217]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11185]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09043]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08350]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07972]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03886]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20929]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06325]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13980]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ20131]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04632]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11186]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15251]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19989]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11187]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14887]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01533]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04637]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10465]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16290]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
</div>
 
</div>
−
== Pathway(s)  ==
 
−
* [[PWY-5951]], (R,R)-butanediol biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY3O-246]], (R,R)-butanediol degradation:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115664
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24343 24343]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02946 R02946]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9CH42 Q9CH42]
 
−
** [http://www.uniprot.org/uniprot/Q04520 Q04520]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: ec-number=ec-1.1.1.4}}
+
{{#set: common-name=d-threo-isocitrate hydro-lyase (cis-aconitate-forming)|cis-aconitate hydratase}}
−
{{#set: nb gene associated=49}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=15}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction ACONITATEHYDR-RXN

  • direction:
    • reversible
  • common-name:
    • cis-aconitate hydratase
    • d-threo-isocitrate hydro-lyase (cis-aconitate-forming)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate synthase):
    • 10 reactions found over 9 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115664
  • RHEA:
  • LIGAND-RXN:





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ACONITATEHYDR-RXN&oldid=143047"