Difference between revisions of "ACONITATEHYDR-RXN"

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(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...")
(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * direction: ** reversible * common-name: ** cis-aconitate hydratase ** d-threo-isocitrate hydro-lyase (cis-aconitate-fo...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction APIGNAR-RXN ==
+
== Reaction ACONITATEHYDR-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** naringenin chalcone isomerase
+
** cis-aconitate hydratase
−
** chalcone isomerase
+
** d-threo-isocitrate hydro-lyase (cis-aconitate-forming)
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
+
* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09285]]
+
* Gene: [[SJ18471]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ20427]]
+
* Gene: [[SJ22396]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-6549]], L-glutamine biosynthesis III:
−
* [[PWY-6787]], flavonoid biosynthesis (in equisetum):
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''6''' reactions found over '''10''' reactions in the full pathway
+
* [[PWY-5392]], reductive TCA cycle II:
−
* [[PWY-7397]], naringenin biosynthesis (engineered):
+
** '''6''' reactions found over '''12''' reactions in the full pathway
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-5690]], TCA cycle II (plants and fungi):
−
* [[PWY-7897]], flavonoid di-C-glucosylation:
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** '''3''' reactions found over '''15''' reactions in the full pathway
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[TCA]], TCA cycle I (prokaryotic):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-398]], TCA cycle III (animals):
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]], TCA cycle VII (acetate-producers):
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]], TCA cycle V (2-oxoglutarate synthase):
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[P23-PWY]], reductive TCA cycle I:
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7124]], ethene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115664
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P11650 P11650]
+
{{#set: common-name=d-threo-isocitrate hydro-lyase (cis-aconitate-forming)|cis-aconitate hydratase}}
−
** [http://www.uniprot.org/uniprot/P11651 P11651]
 
−
** [http://www.uniprot.org/uniprot/P41088 P41088]
 
−
** [http://www.uniprot.org/uniprot/P14298 P14298]
 
−
** [http://www.uniprot.org/uniprot/Q42925 Q42925]
 
−
** [http://www.uniprot.org/uniprot/Q42926 Q42926]
 
−
** [http://www.uniprot.org/uniprot/Q08704 Q08704]
 
−
** [http://www.uniprot.org/uniprot/P28012 P28012]
 
−
** [http://www.uniprot.org/uniprot/P41089 P41089]
 
−
** [http://www.uniprot.org/uniprot/O81980 O81980]
 
−
** [http://www.uniprot.org/uniprot/O22604 O22604]
 
−
** [http://www.uniprot.org/uniprot/O22651 O22651]
 
−
** [http://www.uniprot.org/uniprot/Q43754 Q43754]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=naringenin chalcone isomerase|chalcone isomerase}}
 
−
{{#set: ec-number=ec-5.5.1.6}}
 
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=15}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:25, 18 March 2021

Reaction ACONITATEHYDR-RXN

  • direction:
    • reversible
  • common-name:
    • cis-aconitate hydratase
    • d-threo-isocitrate hydro-lyase (cis-aconitate-forming)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II:
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway
  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 9 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate synthase):
    • 10 reactions found over 9 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 8 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I:
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7124, ethene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115664
  • RHEA:
  • LIGAND-RXN:





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