Difference between revisions of "ACYLCOADEHYDROG-RXN"

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(Created page with "Category:reaction == Reaction RXN-15130 == * direction: ** left-to-right * common-name: ** cystathionine gamma-lyase ** cystathionine γ-lyase * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction ACYLCOADEHYDROG-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1....")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-15130 ==
+
== Reaction ACYLCOADEHYDROG-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** cystathionine gamma-lyase
+
** acyl-coa dehydrogenase
−
** cystathionine γ-lyase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.4.1.1 ec-4.4.1.1]
+
** [http://enzyme.expasy.org/EC/1.3.8 ec-1.3.8]
 +
* synonymous:
 +
** general acyl coa dehydrogenase
 +
** medium-chain acyl-coenzyme a dehydrogenase
 +
** fatty acyl coenzyme a dehydrogenase
 +
** long-chain acyl coenzyme a dehydrogenase
 +
** fatty-acyl-coa dehydrogenase
 +
** long-chain acyl-coa dehydrogenase
 +
** acyl coenzyme a dehydrogenase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-CYSTATHIONINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[CYS]][c]
+
* 1 [[ETF-Oxidized]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[TRANS-D2-ENOYL-COA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ05358]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ03090]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ05357]]
+
* Gene: [[SJ19669]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ20026]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04334]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06456]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ01215]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21233]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07451]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15262]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ13468]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07241]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07909]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21703]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07452]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-801]], homocysteine and cysteine interconversion:
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
* METANETX-RXN : MNXR115669
−
** [http://www.genome.jp/dbget-bin/www_bget?R01001 R01001]
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44705 44705]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P21357 P21357]
+
** [http://www.uniprot.org/uniprot/P16219 P16219]
−
** [http://www.uniprot.org/uniprot/P18757 P18757]
+
** [http://www.uniprot.org/uniprot/P45952 P45952]
−
** [http://www.uniprot.org/uniprot/P32929 P32929]
+
** [http://www.uniprot.org/uniprot/P15651 P15651]
−
** [http://www.uniprot.org/uniprot/P31373 P31373]
+
** [http://www.uniprot.org/uniprot/P11310 P11310]
−
** [http://www.uniprot.org/uniprot/Q47847 Q47847]
+
** [http://www.uniprot.org/uniprot/P08503 P08503]
 +
** [http://www.uniprot.org/uniprot/Q07417 Q07417]
 +
** [http://www.uniprot.org/uniprot/Q54857 Q54857]
 +
** [http://www.uniprot.org/uniprot/P45867 P45867]
 +
** [http://www.uniprot.org/uniprot/Q9X3R3 Q9X3R3]
 +
** [http://www.uniprot.org/uniprot/Q9R9I6 Q9R9I6]
 +
** [http://www.uniprot.org/uniprot/Q96329 Q96329]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=cystathionine &gamma;-lyase|cystathionine gamma-lyase}}
+
{{#set: common-name=acyl-coa dehydrogenase}}
−
{{#set: ec-number=ec-4.4.1.1}}
+
{{#set: ec-number=ec-1.3.8}}
−
{{#set: nb gene associated=3}}
+
{{#set: synonymous=medium-chain acyl-coenzyme a dehydrogenase|long-chain acyl coenzyme a dehydrogenase|long-chain acyl-coa dehydrogenase|fatty-acyl-coa dehydrogenase|fatty acyl coenzyme a dehydrogenase|general acyl coa dehydrogenase|acyl coenzyme a dehydrogenase}}
 +
{{#set: nb gene associated=14}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction ACYLCOADEHYDROG-RXN

  • direction:
    • left-to-right
  • common-name:
    • acyl-coa dehydrogenase
  • ec-number:
  • synonymous:
    • general acyl coa dehydrogenase
    • medium-chain acyl-coenzyme a dehydrogenase
    • fatty acyl coenzyme a dehydrogenase
    • long-chain acyl coenzyme a dehydrogenase
    • fatty-acyl-coa dehydrogenase
    • long-chain acyl-coa dehydrogenase
    • acyl coenzyme a dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links






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