Difference between revisions of "ACYLCOASYN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 1.5.1.20-RXN == * direction: ** left-to-right * common-name: ** 5,10-methylenetetrahydrofolate reductase ** methylenetetrahydrofolate reducta...")
(Created page with "Category:reaction == Reaction ACYLCOASYN-RXN == * direction: ** left-to-right * common-name: ** 2,3,4-saturated fatty acyl-coa synthetase ** fatty acyl-coa synthetase ** l...")
 
(4 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.5.1.20-RXN ==
+
== Reaction ACYLCOASYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 5,10-methylenetetrahydrofolate reductase
+
** 2,3,4-saturated fatty acyl-coa synthetase
−
** methylenetetrahydrofolate reductase (nad(p)h)
+
** fatty acyl-coa synthetase
 +
** long-chain fatty acid-coa ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.20 ec-1.5.1.20]
+
** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
 +
* synonymous:
 +
** fatty acid thiokinase (long-chain)
 +
** acyl-activating enzyme
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09591]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ05591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03650]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00407]]
+
* Gene: [[SJ08692]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ08690]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ13972]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19532]]
+
* Gene: [[SJ08691]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
* [[PWY-7288]], fatty acid &beta;-oxidation VII (yeast peroxisome):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-3841]], folate transformations II (plants):
+
* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-2201]], folate transformations I:
+
* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
+
* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
−
** '''4''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** [http://www.genome.jp/dbget-bin/www_bget?R07168 R07168]
+
* METANETX-RXN : MNXR115670
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9PN93 Q9PN93]
+
** [http://www.uniprot.org/uniprot/P18163 P18163]
−
** [http://www.uniprot.org/uniprot/Q9JUT7 Q9JUT7]
+
** [http://www.uniprot.org/uniprot/P39518 P39518]
−
** [http://www.uniprot.org/uniprot/P45208 P45208]
+
** [http://www.uniprot.org/uniprot/O51162 O51162]
−
** [http://www.uniprot.org/uniprot/P0AEZ1 P0AEZ1]
+
** [http://www.uniprot.org/uniprot/P39002 P39002]
−
** [http://www.uniprot.org/uniprot/P11003 P11003]
+
** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
−
** [http://www.uniprot.org/uniprot/P46151 P46151]
+
** [http://www.uniprot.org/uniprot/Q10776 Q10776]
−
** [http://www.uniprot.org/uniprot/P53128 P53128]
+
** [http://www.uniprot.org/uniprot/O83181 O83181]
 +
** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
 +
** [http://www.uniprot.org/uniprot/P94547 P94547]
 +
** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
 +
** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
 +
** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
 +
** [http://www.uniprot.org/uniprot/P44446 P44446]
 +
** [http://www.uniprot.org/uniprot/O30039 O30039]
 +
** [http://www.uniprot.org/uniprot/O51539 O51539]
 +
** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
 +
** [http://www.uniprot.org/uniprot/P33121 P33121]
 +
** [http://www.uniprot.org/uniprot/P33124 P33124]
 +
** [http://www.uniprot.org/uniprot/P30624 P30624]
 +
** [http://www.uniprot.org/uniprot/Q02602 Q02602]
 +
** [http://www.uniprot.org/uniprot/P69451 P69451]
 +
** [http://www.uniprot.org/uniprot/P69452 P69452]
 +
** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
 +
** [http://www.uniprot.org/uniprot/P47912 P47912]
 +
** [http://www.uniprot.org/uniprot/P73004 P73004]
 +
** [http://www.uniprot.org/uniprot/O81614 O81614]
 +
** [http://www.uniprot.org/uniprot/O15840 O15840]
 +
** [http://www.uniprot.org/uniprot/Q96537 Q96537]
 +
** [http://www.uniprot.org/uniprot/Q96538 Q96538]
 +
** [http://www.uniprot.org/uniprot/Q96338 Q96338]
 +
** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
 +
** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
 +
** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
 +
** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
 +
** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
 +
** [http://www.uniprot.org/uniprot/O60135 O60135]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=5,10-methylenetetrahydrofolate reductase|methylenetetrahydrofolate reductase (nad(p)h)}}
+
{{#set: common-name=fatty acyl-coa synthetase|2,3,4-saturated fatty acyl-coa synthetase|long-chain fatty acid-coa ligase}}
−
{{#set: ec-number=ec-1.5.1.20}}
+
{{#set: ec-number=ec-6.2.1.3}}
−
{{#set: nb gene associated=3}}
+
{{#set: synonymous=acyl-activating enzyme|fatty acid thiokinase (long-chain)}}
 +
{{#set: nb gene associated=6}}
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction ACYLCOASYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2,3,4-saturated fatty acyl-coa synthetase
    • fatty acyl-coa synthetase
    • long-chain fatty acid-coa ligase
  • ec-number:
  • synonymous:
    • fatty acid thiokinase (long-chain)
    • acyl-activating enzyme

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7288, fatty acid β-oxidation VII (yeast peroxisome):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
    • 6 reactions found over 7 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (plant peroxisome):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ACYLCOASYN-RXN&oldid=142415"