Difference between revisions of "ACYLCOASYN-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction RXN66-281 == * direction: ** left-to-right * common-name: ** squalene synthase ** farnesyl-diphosphate farnesyltransferase ** presqualene dip...")
(Created page with "Category:reaction == Reaction STRICTOSIDINE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** strictosidine synthase * ec-number: ** [http://enzyme.expasy.or...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN66-281 ==
+
== Reaction STRICTOSIDINE-SYNTHASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** squalene synthase
+
** strictosidine synthase
−
** farnesyl-diphosphate farnesyltransferase
+
* ec-number:
−
** presqualene diphosphate:farnesyl-diphosphate farnesyltransferase
+
** [http://enzyme.expasy.org/EC/4.3.3.2 ec-4.3.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-465]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[SQUALENE]][c]
+
* 1 [[SECOLOGANIN-CPD]][c] '''+''' 1 [[TRYPTAMINE]][c] '''=>''' 1 [[STRICTOSIDINE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ13532]]
+
* Gene: [[SJ12255]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ02885]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5290]], secologanin and strictosidine biosynthesis:
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6326]], camptothecin biosynthesis:
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15013 15013]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02872 R02872]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03738 R03738]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9VAQ9 Q9VAQ9]
 +
** [http://www.uniprot.org/uniprot/P68175 P68175]
 +
** [http://www.uniprot.org/uniprot/P18417 P18417]
 +
** [http://www.uniprot.org/uniprot/P68174 P68174]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=presqualene diphosphate:farnesyl-diphosphate farnesyltransferase|farnesyl-diphosphate farnesyltransferase|squalene synthase}}
+
{{#set: common-name=strictosidine synthase}}
−
{{#set: nb gene associated=2}}
+
{{#set: ec-number=ec-4.3.3.2}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:06, 5 January 2021

Reaction STRICTOSIDINE-SYNTHASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • strictosidine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5290, secologanin and strictosidine biosynthesis:
    • 2 reactions found over 17 reactions in the full pathway
  • PWY-6326, camptothecin biosynthesis:
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ACYLCOASYN-RXN&oldid=64257"