Difference between revisions of "ACYLCOASYN-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-47...")
(Created page with "Category:reaction == Reaction ACYLCOASYN-RXN == * direction: ** left-to-right * common-name: ** 2,3,4-saturated fatty acyl-coa synthetase ** fatty acyl-coa synthetase ** l...")
 
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY] ==
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== Reaction ACYLCOASYN-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-4751 tax-4751]
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** left-to-right
 
* common-name:
 
* common-name:
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** formaldehyde assimilation iii (dihydroxyacetone cycle)
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** 2,3,4-saturated fatty acyl-coa synthetase
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== Reaction(s) found ==
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** fatty acyl-coa synthetase
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* [[1TRANSKETO-RXN]]
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** long-chain fatty acid-coa ligase
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* [[2TRANSKETO-RXN]]
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* ec-number:
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* [[F16ALDOLASE-RXN]]
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** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
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* [[F16BDEPHOS-RXN]]
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* synonymous:
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* [[GAPOXNPHOSPHN-RXN]]
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** fatty acid thiokinase (long-chain)
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* [[GLYCERONE-KINASE-RXN]]
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** acyl-activating enzyme
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* [[PHOSGLYPHOS-RXN]]
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== Reaction formula ==
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* [[RIB5PISOM-RXN]]
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CPD66-39]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
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* [[RIBULP3EPIM-RXN]]
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== Gene(s) associated with this reaction  ==
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* [[TRANSALDOL-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[TRIOSEPISOMERIZATION-RXN]]
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* Gene: [[SJ05591]]
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== Reaction(s) not found ==
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=FORMALDEHYDE-TRANSKETOLASE-RXN FORMALDEHYDE-TRANSKETOLASE-RXN]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: taxonomic-range=tax-4751}}
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* Gene: [[SJ03650]]
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{{#set: common-name=formaldehyde assimilation iii (dihydroxyacetone cycle)}}
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** Category: [[annotation]]
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{{#set: nb reaction found=11}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: completion rate=0.92}}
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** Category: [[orthology]]
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{{#set: nb total reaction=12}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ08692]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ08690]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* Gene: [[SJ13972]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ08691]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s)  ==
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* [[PWY-7288]], fatty acid &beta;-oxidation VII (yeast peroxisome):
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-391]], fatty acid &beta;-oxidation VI (mammalian peroxisome):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[FAO-PWY]], fatty acid &beta;-oxidation I (generic):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5136]], fatty acid &beta;-oxidation II (plant peroxisome):
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* METANETX-RXN : MNXR115670
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P18163 P18163]
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** [http://www.uniprot.org/uniprot/P39518 P39518]
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** [http://www.uniprot.org/uniprot/O51162 O51162]
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** [http://www.uniprot.org/uniprot/P39002 P39002]
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** [http://www.uniprot.org/uniprot/Q9RYK3 Q9RYK3]
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** [http://www.uniprot.org/uniprot/Q10776 Q10776]
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** [http://www.uniprot.org/uniprot/O83181 O83181]
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** [http://www.uniprot.org/uniprot/Q9RTR4 Q9RTR4]
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** [http://www.uniprot.org/uniprot/P94547 P94547]
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** [http://www.uniprot.org/uniprot/Q9YCF0 Q9YCF0]
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** [http://www.uniprot.org/uniprot/Q9CHR0 Q9CHR0]
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** [http://www.uniprot.org/uniprot/Q9JTK0 Q9JTK0]
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** [http://www.uniprot.org/uniprot/P44446 P44446]
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** [http://www.uniprot.org/uniprot/O30039 O30039]
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** [http://www.uniprot.org/uniprot/O51539 O51539]
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** [http://www.uniprot.org/uniprot/Q9JYJ7 Q9JYJ7]
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** [http://www.uniprot.org/uniprot/P33121 P33121]
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** [http://www.uniprot.org/uniprot/P33124 P33124]
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** [http://www.uniprot.org/uniprot/P30624 P30624]
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** [http://www.uniprot.org/uniprot/Q02602 Q02602]
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** [http://www.uniprot.org/uniprot/P69451 P69451]
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** [http://www.uniprot.org/uniprot/P69452 P69452]
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** [http://www.uniprot.org/uniprot/Q8JZR0 Q8JZR0]
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** [http://www.uniprot.org/uniprot/P47912 P47912]
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** [http://www.uniprot.org/uniprot/P73004 P73004]
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** [http://www.uniprot.org/uniprot/O81614 O81614]
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** [http://www.uniprot.org/uniprot/O15840 O15840]
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** [http://www.uniprot.org/uniprot/Q96537 Q96537]
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** [http://www.uniprot.org/uniprot/Q96538 Q96538]
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** [http://www.uniprot.org/uniprot/Q96338 Q96338]
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** [http://www.uniprot.org/uniprot/Q9T009 Q9T009]
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** [http://www.uniprot.org/uniprot/Q9T0A0 Q9T0A0]
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** [http://www.uniprot.org/uniprot/Q9ZBW6 Q9ZBW6]
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** [http://www.uniprot.org/uniprot/Q9X7Y5 Q9X7Y5]
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** [http://www.uniprot.org/uniprot/Q9X7Z0 Q9X7Z0]
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** [http://www.uniprot.org/uniprot/O60135 O60135]
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</div>
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{{#set: direction=left-to-right}}
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{{#set: common-name=fatty acyl-coa synthetase|2,3,4-saturated fatty acyl-coa synthetase|long-chain fatty acid-coa ligase}}
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{{#set: ec-number=ec-6.2.1.3}}
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{{#set: synonymous=acyl-activating enzyme|fatty acid thiokinase (long-chain)}}
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{{#set: nb gene associated=6}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction ACYLCOASYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • 2,3,4-saturated fatty acyl-coa synthetase
    • fatty acyl-coa synthetase
    • long-chain fatty acid-coa ligase
  • ec-number:
  • synonymous:
    • fatty acid thiokinase (long-chain)
    • acyl-activating enzyme

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7288, fatty acid β-oxidation VII (yeast peroxisome):
    • 4 reactions found over 5 reactions in the full pathway
  • PWY66-391, fatty acid β-oxidation VI (mammalian peroxisome):
    • 6 reactions found over 7 reactions in the full pathway
  • FAO-PWY, fatty acid β-oxidation I (generic):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5136, fatty acid β-oxidation II (plant peroxisome):
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






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