Difference between revisions of "ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN"

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(Created page with "Category:reaction == Reaction GLUCOKIN-RXN == * direction: ** left-to-right * common-name: ** hexokinase ** glucokinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1....")
(Created page with "Category:reaction == Reaction PNKIN-RXN == * direction: ** left-to-right * common-name: ** pyridoxine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUCOKIN-RXN ==
+
== Reaction PNKIN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** hexokinase
+
** pyridoxine kinase
−
** glucokinase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.1 ec-2.7.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
−
** [http://enzyme.expasy.org/EC/2.7.1.2 ec-2.7.1.2]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[Glucopyranose]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXINE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04919]]
+
* Gene: [[SJ08289]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14436]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ12224]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19906]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
−
* [[PWY-2723]], trehalose degradation V:
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
−
* [[PWY0-1182]], trehalose degradation II (cytosolic):
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
−
* [[P122-PWY]], heterolactic fermentation:
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-5661]], GDP-glucose biosynthesis:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[GLYCOCAT-PWY]], glycogen degradation I:
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7238]], sucrose biosynthesis II:
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P124-PWY]], Bifidobacterium shunt:
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation:
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2722]], trehalose degradation IV:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[TREDEGLOW-PWY]], trehalose degradation I (low osmolarity):
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-621]], sucrose degradation III (sucrose invertase):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II:
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25109 25109]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00299 R00299]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01909 R01909]
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17825 17825]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P0A6V8 P0A6V8]
 
−
** [http://www.uniprot.org/uniprot/P21908 P21908]
 
−
** [http://www.uniprot.org/uniprot/P64254 P64254]
 
−
** [http://www.uniprot.org/uniprot/Q8XDH5 Q8XDH5]
 
−
** [http://www.uniprot.org/uniprot/Q8XDH4 Q8XDH4]
 
−
** [http://www.uniprot.org/uniprot/Q9CE25 Q9CE25]
 
−
** [http://www.uniprot.org/uniprot/P52792 P52792]
 
−
** [http://www.uniprot.org/uniprot/Q9V2Z6 Q9V2Z6]
 
−
** [http://www.uniprot.org/uniprot/Q7M537 Q7M537]
 
−
** [http://www.uniprot.org/uniprot/P17709 P17709]
 
−
** [http://www.uniprot.org/uniprot/Q04409 Q04409]
 
−
** [http://www.uniprot.org/uniprot/Q92407 Q92407]
 
−
** [http://www.uniprot.org/uniprot/O31392 O31392]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=glucokinase|hexokinase}}
+
{{#set: common-name=pyridoxine kinase}}
−
{{#set: ec-number=ec-2.7.1.2|ec-2.7.1.1}}
+
{{#set: ec-number=ec-2.7.1.35}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=14}}
+
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction PNKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyridoxine kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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