Difference between revisions of "ADNK"

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(Created page with "Category:reaction == Reaction SALICYLATE-1-MONOOXYGENASE-RXN == * direction: ** left-to-right * common-name: ** salicylate 1-monooxygenase * ec-number: ** [http://enzyme.e...")
(Created page with "Category:reaction == Reaction RXN-13697 == * direction: ** reversible * common-name: ** aspartate aminotransferase ** l-phenylalanine:2-oxoglutarate aminotransferase * ec-...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction SALICYLATE-1-MONOOXYGENASE-RXN ==
+
== Reaction RXN-13697 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** salicylate 1-monooxygenase
+
** aspartate aminotransferase
 +
** l-phenylalanine:2-oxoglutarate aminotransferase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.13.1 ec-1.14.13.1]
+
** [http://enzyme.expasy.org/EC/2.6.1.1 ec-2.6.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-110]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CATECHOL]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[OXALACETIC_ACID]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21101]]
+
* Gene: [[SJ04188]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20943]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07646]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05778]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08678]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6183]], salicylate degradation I:
+
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11005 11005]
+
{{#set: common-name=l-phenylalanine:2-oxoglutarate aminotransferase|aspartate aminotransferase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-2.6.1.1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00818 R00818]
+
{{#set: nb gene associated=5}}
−
* UNIPROT:
+
{{#set: nb pathway associated=2}}
−
** [http://www.uniprot.org/uniprot/P23262 P23262]
+
{{#set: reconstruction category=annotation|orthology}}
−
** [http://www.uniprot.org/uniprot/Q53552 Q53552]
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
−
** [http://www.uniprot.org/uniprot/Q59700 Q59700]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=salicylate 1-monooxygenase}}
 
−
{{#set: ec-number=ec-1.14.13.1}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:03, 5 January 2021

Reaction RXN-13697

  • direction:
    • reversible
  • common-name:
    • aspartate aminotransferase
    • l-phenylalanine:2-oxoglutarate aminotransferase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7115, C4 photosynthetic carbon assimilation cycle, NAD-ME type:
    • 9 reactions found over 10 reactions in the full pathway
  • PWY-7117, C4 photosynthetic carbon assimilation cycle, PEPCK type:
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=ADNK&oldid=63245"