Difference between revisions of "ADNKm"

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(Created page with "Category:reaction == Reaction ECOAH8h == * direction: ** reversible * common-name: ** (s)-hydroxyoctadecanoyl-coa hydro-lyase == Reaction formula == * 1.0 CPD0-2253[h]...")
(Created page with "Category:reaction == Reaction RXN-8675 == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase * synonymous: ** uroporph...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction ECOAH8h ==
+
== Reaction RXN-8675 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** (s)-hydroxyoctadecanoyl-coa hydro-lyase
+
** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
 +
* synonymous:
 +
** uroporphyrinogen-iii methyltransferase
 +
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 +
** sira
 +
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 +
** uroporphyrin-iii c-methyltransferase (incorrect)
 +
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
 +
** cysg
 +
** uroporphyrinogen methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD0-2253]][h] '''<=>''' 1.0 [[CPD-10262]][h] '''+''' 1.0 [[WATER]][h]
+
* 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03584]]
+
* Gene: [[SJ12313]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5194]], siroheme biosynthesis:
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
 +
** '''2''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
 +
** '''4''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5196]], factor 430 biosynthesis:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR110923
−
{{#set: common-name=(s)-hydroxyoctadecanoyl-coa hydro-lyase}}
+
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}}
 +
{{#set: synonymous=sira|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|adenosylmethionine-uroporphyrinogen iii methyltransferase|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen methyltransferase}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:34, 15 March 2021

Reaction RXN-8675

  • direction:
    • left-to-right
  • common-name:
    • s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
  • synonymous:
    • uroporphyrinogen-iii methyltransferase
    • s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
    • sira
    • adenosylmethionine-uroporphyrinogen iii methyltransferase
    • uroporphyrin-iii c-methyltransferase (incorrect)
    • s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
    • cysg
    • uroporphyrinogen methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5194, siroheme biosynthesis:
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation):
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion):
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR110923
  • RHEA:
  • LIGAND-RXN:





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