Difference between revisions of "ADOMET-DMK-METHYLTRANSFER-RXN"

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(Created page with "Category:reaction == Reaction PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29. == * direction: ** left-to-right == Reaction formula == * 1.0 CPD0-1422[c]...")
(Created page with "Category:reaction == Reaction RXN-5841 == * direction: ** left-to-right * common-name: ** 5'-nucleotidase ** β-nicotinamide d-ribonucleotide phosphohydrolase * ec-num...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PHOSPHATIDATE-PHOSPHATASE-RXN-CPD0-1422/WATER//CPD66-34/Pi.29. ==
+
== Reaction RXN-5841 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** 5'-nucleotidase
 +
** β-nicotinamide d-ribonucleotide phosphohydrolase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD0-1422]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[CPD66-34]][c] '''+''' 1.0 [[Pi]][c]
+
* 1 [[NICOTINAMIDE_NUCLEOTIDE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NICOTINAMIDE_RIBOSE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ09030]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15366]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18895]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5381]], pyridine nucleotide cycling (plants):
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[NAD-BIOSYNTHESIS-II]], NAD salvage pathway III (to nicotinamide riboside):
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30816 30816]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02323 R02323]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=5'-nucleotidase|&beta;-nicotinamide d-ribonucleotide phosphohydrolase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-3.1.3.5}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb gene associated=5}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 13:16, 14 January 2021

Reaction RXN-5841

  • direction:
    • left-to-right
  • common-name:
    • 5'-nucleotidase
    • β-nicotinamide d-ribonucleotide phosphohydrolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5381, pyridine nucleotide cycling (plants):
    • 6 reactions found over 11 reactions in the full pathway
  • NAD-BIOSYNTHESIS-II, NAD salvage pathway III (to nicotinamide riboside):
    • 4 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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