Difference between revisions of "ADP"

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(Created page with "Category:gene == Gene SJ01731 == * transcription-direction: ** negative * right-end-position: ** 145557 * left-end-position: ** 143563 * centisome-position: ** 98.26957...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8665 RXN-8665] == * direction: ** left-to-right * common-name: ** tryptophan 2,3-dioxygenase *...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ01731 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8665 RXN-8665] ==
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* transcription-direction:
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* direction:
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** negative
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** left-to-right
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* right-end-position:
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* common-name:
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** 145557
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** tryptophan 2,3-dioxygenase
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* left-end-position:
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* ec-number:
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** 143563
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** [http://enzyme.expasy.org/EC/1.13.11.11 ec-1.13.11.11]
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* centisome-position:
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** [http://enzyme.expasy.org/EC/1.13.11.52 ec-1.13.11.52]
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** 98.26957   
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[TRP]][c] '''=>''' 1 [[N-FORMYLKYNURENINE]][c]
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* [[S.japonica_carotenoid_curated]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[SJ12575]]
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* [[3.4.25.1-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: transcription-direction=negative}}
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** Category: [[orthology]]
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{{#set: right-end-position=145557}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=143563}}
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== Pathway(s)  ==
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{{#set: centisome-position=98.26957    }}
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* [[PWY-7765]], 3-hydroxy-4-methyl-anthranilate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7765 PWY-7765]
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** '''3''' reactions found over '''5''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[PWY-7717]], 3-hydroxy-4-methyl-anthranilate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7717 PWY-7717]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5651]], L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5651 PWY-5651]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[TRPCAT-PWY]], L-tryptophan degradation I (via anthranilate): [http://metacyc.org/META/NEW-IMAGE?object=TRPCAT-PWY TRPCAT-PWY]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6309]], L-tryptophan degradation XI (mammalian, via kynurenine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6309 PWY-6309]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P21643 P21643]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00678 R00678]
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24536 24536]
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{{#set: direction=left-to-right}}
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{{#set: common-name=tryptophan 2,3-dioxygenase}}
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{{#set: ec-number=ec-1.13.11.52|ec-1.13.11.11}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=5}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction RXN-8665

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7765, 3-hydroxy-4-methyl-anthranilate biosynthesis II: PWY-7765
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7717, 3-hydroxy-4-methyl-anthranilate biosynthesis I: PWY-7717
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-5651, L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde: PWY-5651
    • 3 reactions found over 5 reactions in the full pathway
  • TRPCAT-PWY, L-tryptophan degradation I (via anthranilate): TRPCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6309, L-tryptophan degradation XI (mammalian, via kynurenine): PWY-6309
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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