Difference between revisions of "AGMATINE-DEIMINASE-RXN"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction CHORISMATE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** chorismate synthase * ec-number: ** [http://enzyme.expasy.org/EC/4...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6082 PWY-6082] ==
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== Reaction CHORISMATE-SYNTHASE-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** alginate biosynthesis ii (bacterial)
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** chorismate synthase
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== Reaction(s) found ==
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* ec-number:
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* [[ALGINATE-SYNTHASE-RXN]]
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** [http://enzyme.expasy.org/EC/4.2.3.5 ec-4.2.3.5]
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* [[GDP-MANNOSE-6-DEHYDROGENASE-RXN]]
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== Reaction formula ==
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* [[RXN-9839]]
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* 1 [[3-ENOLPYRUVYL-SHIKIMATE-5P]][c] '''=>''' 1 [[CHORISMATE]][c] '''+''' 1 [[Pi]][c]
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== Reaction(s) not found ==
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16462 RXN-16462]
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* Gene: [[SJ00821]]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-269 TRANS-RXN-269]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-270 TRANS-RXN-270]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=TRANS-RXN-271 TRANS-RXN-271]
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** Category: [[orthology]]
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{{#set: taxonomic-range=tax-2}}
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=alginate biosynthesis ii (bacterial)}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb reaction found=3}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=0.43}}
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== Pathway(s) ==
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{{#set: nb total reaction=7}}
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
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** '''6''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21021 21021]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R01714 R01714]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P27793 P27793]
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** [http://www.uniprot.org/uniprot/P23353 P23353]
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** [http://www.uniprot.org/uniprot/Q9JT81 Q9JT81]
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** [http://www.uniprot.org/uniprot/Q58575 Q58575]
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** [http://www.uniprot.org/uniprot/P43875 P43875]
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** [http://www.uniprot.org/uniprot/Q9PM41 Q9PM41]
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** [http://www.uniprot.org/uniprot/Q9CET2 Q9CET2]
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** [http://www.uniprot.org/uniprot/P28777 P28777]
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** [http://www.uniprot.org/uniprot/Q42885 Q42885]
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** [http://www.uniprot.org/uniprot/Q42884 Q42884]
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** [http://www.uniprot.org/uniprot/P16280 P16280]
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** [http://www.uniprot.org/uniprot/P12008 P12008]
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** [http://www.uniprot.org/uniprot/O74413 O74413]
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** [http://www.uniprot.org/uniprot/Q12640 Q12640]
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{{#set: direction=left-to-right}}
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{{#set: common-name=chorismate synthase}}
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{{#set: ec-number=ec-4.2.3.5}}
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{{#set: nb gene associated=1}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:43, 18 December 2020

Reaction CHORISMATE-SYNTHASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • chorismate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate:
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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