Difference between revisions of "AICARSYN-RXN"

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(Created page with "Category:reaction == Reaction GTP-CYCLOHYDRO-I-RXN == * direction: ** left-to-right * common-name: ** gtp cyclohydrolase * ec-number: ** [http://enzyme.expasy.org/EC/3.5.4...")
(Created page with "Category:reaction == Reaction CITSYN-RXN == * direction: ** left-to-right * common-name: ** citrate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GTP-CYCLOHYDRO-I-RXN ==
+
== Reaction CITSYN-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gtp cyclohydrolase
+
** citrate synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.16 ec-3.5.4.16]
+
** [http://enzyme.expasy.org/EC/2.3.3.16 ec-2.3.3.16]
 +
** [http://enzyme.expasy.org/EC/2.3.3.1 ec-2.3.3.1]
 +
* synonymous:
 +
** citrate synthesis
 +
** condensing enzyme
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DIHYDRONEOPTERIN-P3]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ACETYL-COA]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CIT]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00877]]
+
* Gene: [[SJ02212]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1433]], tetrahydromonapterin biosynthesis:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
−
* [[PWY-7442]], drosopterin and aurodrosopterin biosynthesis:
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
* [[TCA]], TCA cycle I (prokaryotic):
−
* [[PWY-6703]], preQ0 biosynthesis:
+
** '''9''' reactions found over '''10''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[REDCITCYC]], TCA cycle VI (Helicobacter):
−
* [[PWY-7852]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis IV (Plasmodium):
+
** '''5''' reactions found over '''9''' reactions in the full pathway
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY66-398]], TCA cycle III (animals):
−
* [[PWY-6147]], 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I:
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-7254]], TCA cycle VII (acetate-producers):
−
* [[PWY-5664]], erythro-tetrahydrobiopterin biosynthesis II:
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
−
* [[PWY-6983]], threo-tetrahydrobiopterin biosynthesis:
+
** '''10''' reactions found over '''12''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
−
* [[PWY-5663]], erythro-tetrahydrobiopterin biosynthesis I:
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
 +
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6728]], methylaspartate cycle:
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 +
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6549]], L-glutamine biosynthesis III:
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5750]], itaconate biosynthesis I:
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5690]], TCA cycle II (plants and fungi):
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00351 R00351]
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17473 17473]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16846 16846]
−
* LIGAND-RXN:
+
* PIR:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00424 R00424]
+
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A43936 A43936]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81200 A81200]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B81139 B81139]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64760 E64760]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F86708 F86708]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69600 G69600]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81265 G81265]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39506 I39506]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40044 I40044]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40380 I40380]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40717 I40717]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JQ1392 JQ1392]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PQ0046 PQ0046]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41527 S41527]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41563 S41563]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S42370 S42370]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44316 S44316]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52814 S52814]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T02390 T02390]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09334 T09334]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44615 T44615]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBY YKBY]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKBYC YKBYC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKEC YKEC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMUM YKMUM]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKMY YKMY]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPG YKPG]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKPSCA YKPSCA]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKQPC YKQPC]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKRECP YKRECP]
 +
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=YKYT YKYT]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19465 P19465]
+
** [http://www.uniprot.org/uniprot/Q9JRA5 Q9JRA5]
−
** [http://www.uniprot.org/uniprot/P22288 P22288]
+
** [http://www.uniprot.org/uniprot/Q9JQX0 Q9JQX0]
−
** [http://www.uniprot.org/uniprot/P43866 P43866]
+
** [http://www.uniprot.org/uniprot/P31660 P31660]
−
** [http://www.uniprot.org/uniprot/P51594 P51594]
+
** [http://www.uniprot.org/uniprot/Q9CHQ6 Q9CHQ6]
−
** [http://www.uniprot.org/uniprot/P64207 P64207]
+
** [http://www.uniprot.org/uniprot/P39120 P39120]
−
** [http://www.uniprot.org/uniprot/Q9CGE3 Q9CGE3]
+
** [http://www.uniprot.org/uniprot/Q9PLZ5 Q9PLZ5]
−
** [http://www.uniprot.org/uniprot/O66603 O66603]
+
** [http://www.uniprot.org/uniprot/P20902 P20902]
−
** [http://www.uniprot.org/uniprot/P56462 P56462]
+
** [http://www.uniprot.org/uniprot/P51033 P51033]
−
** [http://www.uniprot.org/uniprot/P0A6T5 P0A6T5]
+
** [http://www.uniprot.org/uniprot/P39119 P39119]
−
** [http://www.uniprot.org/uniprot/P50141 P50141]
+
** [http://www.uniprot.org/uniprot/P42457 P42457]
−
** [http://www.uniprot.org/uniprot/P30793 P30793]
+
** [http://www.uniprot.org/uniprot/P18789 P18789]
−
** [http://www.uniprot.org/uniprot/P51601 P51601]
+
** [http://www.uniprot.org/uniprot/P20903 P20903]
−
** [http://www.uniprot.org/uniprot/Q05915 Q05915]
+
** [http://www.uniprot.org/uniprot/P51038 P51038]
−
** [http://www.uniprot.org/uniprot/P51597 P51597]
+
** [http://www.uniprot.org/uniprot/P34085 P34085]
−
** [http://www.uniprot.org/uniprot/P51600 P51600]
+
** [http://www.uniprot.org/uniprot/P34575 P34575]
−
** [http://www.uniprot.org/uniprot/Q94465 Q94465]
+
** [http://www.uniprot.org/uniprot/Q43175 Q43175]
−
** [http://www.uniprot.org/uniprot/Q55759 Q55759]
+
** [http://www.uniprot.org/uniprot/P43635 P43635]
 +
** [http://www.uniprot.org/uniprot/O24259 O24259]
 +
** [http://www.uniprot.org/uniprot/O32705 O32705]
 +
** [http://www.uniprot.org/uniprot/P00890 P00890]
 +
** [http://www.uniprot.org/uniprot/P08679 P08679]
 +
** [http://www.uniprot.org/uniprot/P0ABH7 P0ABH7]
 +
** [http://www.uniprot.org/uniprot/Q47237 Q47237]
 +
** [http://www.uniprot.org/uniprot/P20115 P20115]
 +
** [http://www.uniprot.org/uniprot/P26491 P26491]
 +
** [http://www.uniprot.org/uniprot/P00889 P00889]
 +
** [http://www.uniprot.org/uniprot/P20901 P20901]
 +
** [http://www.uniprot.org/uniprot/P09948 P09948]
 +
** [http://www.uniprot.org/uniprot/P21553 P21553]
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gtp cyclohydrolase}}
+
{{#set: common-name=citrate synthase}}
−
{{#set: ec-number=ec-3.5.4.16}}
+
{{#set: ec-number=ec-2.3.3.1|ec-2.3.3.16}}
 +
{{#set: synonymous=citrate synthesis|condensing enzyme}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=14}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 13:18, 14 January 2021

Reaction CITSYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • citrate synthase
  • ec-number:
  • synonymous:
    • citrate synthesis
    • condensing enzyme

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase):
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic):
    • 9 reactions found over 10 reactions in the full pathway
  • REDCITCYC, TCA cycle VI (Helicobacter):
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals):
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254, TCA cycle VII (acetate-producers):
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913, partial TCA cycle (obligate autotrophs):
    • 10 reactions found over 11 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124, ethylene biosynthesis V (engineered):
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6728, methylaspartate cycle:
    • 11 reactions found over 19 reactions in the full pathway
  • GLYOXYLATE-BYPASS, glyoxylate cycle:
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6549, L-glutamine biosynthesis III:
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-5750, itaconate biosynthesis I:
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi):
    • 8 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=AICARSYN-RXN&oldid=90041"