Difference between revisions of "AICARTRANSFORM-RXN"

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(Created page with "Category:reaction == Reaction GLUTDECARBOX-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.15 ec-4.1.1.15] == Reaction formula == *...")
(Created page with "Category:reaction == Reaction DLACTDEHYDROGNAD-RXN == * direction: ** left-to-right * common-name: ** d-lactate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GLUTDECARBOX-RXN ==
+
== Reaction DLACTDEHYDROGNAD-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** d-lactate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.15 ec-4.1.1.15]
+
** [http://enzyme.expasy.org/EC/1.1.1.28 ec-1.1.1.28]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GLT]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[4-AMINO-BUTYRATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[D-LACTATE]][c] '''+''' 1 [[NAD]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12405]]
+
* Gene: [[SJ21294]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ20245]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate):
+
* [[P122-PWY]], heterolactic fermentation:
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
* [[GLUDEG-I-PWY]], GABA shunt:
+
* [[FERMENTATION-PWY]], mixed acid fermentation:
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''11''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-4321]], L-glutamate degradation IV:
+
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6454]], vancomycin resistance I:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17786 17786]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16371 16371]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00704 R00704]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P20228 P20228]
+
** [http://www.uniprot.org/uniprot/P26297 P26297]
−
** [http://www.uniprot.org/uniprot/Q05329 Q05329]
+
** [http://www.uniprot.org/uniprot/P26298 P26298]
−
** [http://www.uniprot.org/uniprot/P18088 P18088]
+
** [http://www.uniprot.org/uniprot/Q7M4J0 Q7M4J0]
−
** [http://www.uniprot.org/uniprot/P14748 P14748]
+
** [http://www.uniprot.org/uniprot/Q9R553 Q9R553]
−
** [http://www.uniprot.org/uniprot/Q07346 Q07346]
+
** [http://www.uniprot.org/uniprot/P06149 P06149]
−
** [http://www.uniprot.org/uniprot/Q99259 Q99259]
+
** [http://www.uniprot.org/uniprot/Q9JT76 Q9JT76]
−
** [http://www.uniprot.org/uniprot/P69910 P69910]
+
** [http://www.uniprot.org/uniprot/Q9JUP8 Q9JUP8]
−
** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
+
** [http://www.uniprot.org/uniprot/P52643 P52643]
−
** [http://www.uniprot.org/uniprot/P48321 P48321]
+
** [http://www.uniprot.org/uniprot/P45295 P45295]
−
** [http://www.uniprot.org/uniprot/P48319 P48319]
+
** [http://www.uniprot.org/uniprot/P30901 P30901]
−
** [http://www.uniprot.org/uniprot/Q05683 Q05683]
+
** [http://www.uniprot.org/uniprot/Q89388 Q89388]
−
** [http://www.uniprot.org/uniprot/Q24062 Q24062]
 
−
** [http://www.uniprot.org/uniprot/P69908 P69908]
 
−
** [http://www.uniprot.org/uniprot/P48320 P48320]
 
−
** [http://www.uniprot.org/uniprot/Q59956 Q59956]
 
−
** [http://www.uniprot.org/uniprot/P48318 P48318]
 
−
** [http://www.uniprot.org/uniprot/Q49854 Q49854]
 
−
** [http://www.uniprot.org/uniprot/Q49855 Q49855]
 
−
** [http://www.uniprot.org/uniprot/Q49863 Q49863]
 
−
** [http://www.uniprot.org/uniprot/O81101 O81101]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-4.1.1.15}}
+
{{#set: common-name=d-lactate dehydrogenase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-1.1.1.28}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb gene associated=2}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: nb pathway associated=6}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}

Revision as of 19:03, 14 January 2021

Reaction DLACTDEHYDROGNAD-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-lactate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • FERMENTATION-PWY, mixed acid fermentation:
    • 11 reactions found over 16 reactions in the full pathway
  • PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii):
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6454, vancomycin resistance I:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway
  • ALACAT2-PWY, L-alanine degradation II (to D-lactate):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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