Difference between revisions of "AICARTRANSFORM-RXN"

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(Created page with "Category:reaction == Reaction DLACTDEHYDROGNAD-RXN == * direction: ** left-to-right * common-name: ** d-lactate dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction AICARTRANSFORM-RXN == * direction: ** reversible * common-name: ** aicar transformylase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.3...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DLACTDEHYDROGNAD-RXN ==
+
== Reaction AICARTRANSFORM-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** d-lactate dehydrogenase
+
** aicar transformylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.28 ec-1.1.1.28]
+
** [http://enzyme.expasy.org/EC/2.1.2.3 ec-2.1.2.3]
 +
* synonymous:
 +
** 5-aminoimidazole-4-carboxamide ribonucleotide transformylase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[D-LACTATE]][c] '''+''' 1 [[NAD]][c]
+
* 1 [[AICAR]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''<=>''' 1 [[PHOSPHORIBOSYL-FORMAMIDO-CARBOXAMIDE]][c] '''+''' 1 [[THF-GLU-N]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21294]]
+
* Gene: [[SJ21660]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20245]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[P122-PWY]], heterolactic fermentation:
+
* [[PWY-6123]], inosine-5'-phosphate biosynthesis I:
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
+
* [[PWY-6124]], inosine-5'-phosphate biosynthesis II:
−
** '''11''' reactions found over '''16''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6454]], vancomycin resistance I:
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115676
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16371 16371]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22195 22195]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00704 R00704]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04560 R04560]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P26297 P26297]
+
** [http://www.uniprot.org/uniprot/P43852 P43852]
−
** [http://www.uniprot.org/uniprot/P26298 P26298]
+
** [http://www.uniprot.org/uniprot/P12048 P12048]
−
** [http://www.uniprot.org/uniprot/Q7M4J0 Q7M4J0]
+
** [http://www.uniprot.org/uniprot/P31335 P31335]
−
** [http://www.uniprot.org/uniprot/Q9R553 Q9R553]
+
** [http://www.uniprot.org/uniprot/P26978 P26978]
−
** [http://www.uniprot.org/uniprot/P06149 P06149]
+
** [http://www.uniprot.org/uniprot/P15639 P15639]
−
** [http://www.uniprot.org/uniprot/Q9JT76 Q9JT76]
+
** [http://www.uniprot.org/uniprot/Q9PNY2 Q9PNY2]
−
** [http://www.uniprot.org/uniprot/Q9JUP8 Q9JUP8]
+
** [http://www.uniprot.org/uniprot/Q9JUQ8 Q9JUQ8]
−
** [http://www.uniprot.org/uniprot/P52643 P52643]
+
** [http://www.uniprot.org/uniprot/P31939 P31939]
−
** [http://www.uniprot.org/uniprot/P45295 P45295]
+
** [http://www.uniprot.org/uniprot/Q59493 Q59493]
−
** [http://www.uniprot.org/uniprot/P30901 P30901]
+
** [http://www.uniprot.org/uniprot/P38009 P38009]
−
** [http://www.uniprot.org/uniprot/Q89388 Q89388]
+
** [http://www.uniprot.org/uniprot/P54113 P54113]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/O64767 O64767]
−
{{#set: common-name=d-lactate dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/O74928 O74928]
−
{{#set: ec-number=ec-1.1.1.28}}
+
{{#set: direction=reversible}}
−
{{#set: nb gene associated=2}}
+
{{#set: common-name=aicar transformylase}}
−
{{#set: nb pathway associated=6}}
+
{{#set: ec-number=ec-2.1.2.3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: synonymous=5-aminoimidazole-4-carboxamide ribonucleotide transformylase}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction AICARTRANSFORM-RXN

  • direction:
    • reversible
  • common-name:
    • aicar transformylase
  • ec-number:
  • synonymous:
    • 5-aminoimidazole-4-carboxamide ribonucleotide transformylase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6123, inosine-5'-phosphate biosynthesis I:
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6124, inosine-5'-phosphate biosynthesis II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






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