Difference between revisions of "AICARTRANSFORM-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** reversible * common-name: ** citrate hy...")
(Created page with "Category:reaction == Reaction UNSPECIFIC-MONOOXYGENASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.14.1 ec-1.14.14.1] == Reactio...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] ==
+
== Reaction UNSPECIFIC-MONOOXYGENASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
+
* ec-number:
−
** citrate hydro-lyase (cis-aconitate-forming)
+
** [http://enzyme.expasy.org/EC/1.14.14.1 ec-1.14.14.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[RH-Group]][c] '''+''' 1 [[Red-NADPH-Hemoprotein-Reductases]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[Ox-NADPH-Hemoprotein-Reductases]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18471]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** Category: [[annotation]]
+
* Gene: [[SJ05072]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05370]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07227]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03397]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ18127]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12861]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19505]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05110]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09087]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ07228]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (Helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC]
 
−
** '''5''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5750]], itaconate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750]
 
−
** '''3''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* LIGAND-RXN:
−
* RHEA:
+
** [http://www.genome.jp/dbget-bin/www_bget?R04122 R04122]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
+
** [http://www.uniprot.org/uniprot/P04800 P04800]
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
+
** [http://www.uniprot.org/uniprot/Q06884 Q06884]
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
+
** [http://www.uniprot.org/uniprot/P10632 P10632]
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
+
** [http://www.uniprot.org/uniprot/P14779 P14779]
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
+
** [http://www.uniprot.org/uniprot/O08336 O08336]
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
+
** [http://www.uniprot.org/uniprot/Q7M0C2 Q7M0C2]
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
+
** [http://www.uniprot.org/uniprot/P00185 P00185]
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
+
** [http://www.uniprot.org/uniprot/P00176 P00176]
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
+
** [http://www.uniprot.org/uniprot/P49602 P49602]
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
+
** [http://www.uniprot.org/uniprot/P43083 P43083]
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
+
** [http://www.uniprot.org/uniprot/Q12573 Q12573]
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
+
** [http://www.uniprot.org/uniprot/O04892 O04892]
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
+
{{#set: ec-number=ec-1.14.14.1}}
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
+
{{#set: nb gene associated=10}}
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
 
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
 
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
 
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=citrate hydro-lyase (cis-aconitate-forming)}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=16}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:42, 18 December 2020

Reaction UNSPECIFIC-MONOOXYGENASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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