Difference between revisions of "AICARTRANSFORM-RXN"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.17.22-RXN 3.4.17.22-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == * direction: ** reversible * common-name: ** citrate hy...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACONITATEDEHYDR-RXN ACONITATEDEHYDR-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
− | * | + | * common-name: |
− | ** | + | ** citrate hydro-lyase (cis-aconitate-forming) |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ18471]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ22396]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA] | ||
+ | ** '''9''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392] | ||
+ | ** '''6''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690] | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase): [http://metacyc.org/META/NEW-IMAGE?object=P105-PWY P105-PWY] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[REDCITCYC]], TCA cycle VIII (Helicobacter): [http://metacyc.org/META/NEW-IMAGE?object=REDCITCYC REDCITCYC] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7254]], TCA cycle VII (acetate-producers): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7254 PWY-7254] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''11''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[GLYOXYLATE-BYPASS]], glyoxylate cycle: [http://metacyc.org/META/NEW-IMAGE?object=GLYOXYLATE-BYPASS GLYOXYLATE-BYPASS] | ||
+ | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5750]], itaconate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5750 PWY-5750] | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] | ||
+ | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124] | ||
+ | ** '''8''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728] | ||
+ | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
+ | </div> | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: | + | * RHEA: |
− | {{#set: nb gene associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231] |
− | {{#set: nb pathway associated= | + | * PIR: |
− | {{#set: reconstruction category=annotation}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153] |
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101] | ||
+ | ** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/P16276 P16276] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01059 Q01059] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5] | ||
+ | ** [http://www.uniprot.org/uniprot/P37032 P37032] | ||
+ | ** [http://www.uniprot.org/uniprot/P81291 P81291] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88] | ||
+ | ** [http://www.uniprot.org/uniprot/P36683 P36683] | ||
+ | ** [http://www.uniprot.org/uniprot/O53166 O53166] | ||
+ | ** [http://www.uniprot.org/uniprot/P25516 P25516] | ||
+ | ** [http://www.uniprot.org/uniprot/P09339 P09339] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05] | ||
+ | ** [http://www.uniprot.org/uniprot/Q99798 Q99798] | ||
+ | ** [http://www.uniprot.org/uniprot/P28271 P28271] | ||
+ | ** [http://www.uniprot.org/uniprot/P21399 P21399] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42669 Q42669] | ||
+ | ** [http://www.uniprot.org/uniprot/P19414 P19414] | ||
+ | ** [http://www.uniprot.org/uniprot/P20004 P20004] | ||
+ | ** [http://www.uniprot.org/uniprot/P49609 P49609] | ||
+ | ** [http://www.uniprot.org/uniprot/P74582 P74582] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42560 Q42560] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36] | ||
+ | ** [http://www.uniprot.org/uniprot/O04916 O04916] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=citrate hydro-lyase (cis-aconitate-forming)}} | ||
+ | {{#set: nb gene associated=2}} | ||
+ | {{#set: nb pathway associated=16}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 09:32, 27 August 2019
Contents
Reaction ACONITATEDEHYDR-RXN
- direction:
- reversible
- common-name:
- citrate hydro-lyase (cis-aconitate-forming)
Reaction formula
- 1 CIT[c] <=> 1 CIS-ACONITATE[c] + 1 WATER[c]
Gene(s) associated with this reaction
- Gene: SJ18471
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ22396
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- TCA, TCA cycle I (prokaryotic): TCA
- 9 reactions found over 10 reactions in the full pathway
- PWY-6549, L-glutamine biosynthesis III: PWY-6549
- 8 reactions found over 9 reactions in the full pathway
- PWY-5392, reductive TCA cycle II: PWY-5392
- 6 reactions found over 12 reactions in the full pathway
- PWY-5690, TCA cycle II (plants and fungi): PWY-5690
- 8 reactions found over 9 reactions in the full pathway
- P105-PWY, TCA cycle IV (2-oxoglutarate decarboxylase): P105-PWY
- 10 reactions found over 11 reactions in the full pathway
- REDCITCYC, TCA cycle VIII (Helicobacter): REDCITCYC
- 5 reactions found over 9 reactions in the full pathway
- PWY66-398, TCA cycle III (animals): PWY66-398
- 10 reactions found over 11 reactions in the full pathway
- PWY-7254, TCA cycle VII (acetate-producers): PWY-7254
- 7 reactions found over 9 reactions in the full pathway
- PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
- 10 reactions found over 12 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 11 reactions found over 16 reactions in the full pathway
- GLYOXYLATE-BYPASS, glyoxylate cycle: GLYOXYLATE-BYPASS
- 6 reactions found over 6 reactions in the full pathway
- PWY-5750, itaconate biosynthesis I: PWY-5750
- 3 reactions found over 2 reactions in the full pathway
- PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
- 10 reactions found over 11 reactions in the full pathway
- P23-PWY, reductive TCA cycle I: P23-PWY
- 9 reactions found over 12 reactions in the full pathway
- PWY-7124, ethylene biosynthesis V (engineered): PWY-7124
- 8 reactions found over 8 reactions in the full pathway
- PWY-6728, methylaspartate cycle: PWY-6728
- 11 reactions found over 19 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
- RHEA:
- PIR:
- UNIPROT:
- LIGAND-RXN: