Difference between revisions of "AIRS-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16017 RXN-16017] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16017 RXN-16017] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 +
* common-name:
 +
** proline-trna ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
+
** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETYL-COA]][c] '''+''' 10 [[MALONYL-COA]][c] '''+''' 14 [[NADPH]][c] '''+''' 23 [[PROTON]][c] '''=>''' 10 [[CARBON-DIOXIDE]][c] '''+''' 11 [[CO-A]][c] '''+''' 1 [[CPD-10244]][c] '''+''' 14 [[NADP]][c] '''+''' 9 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ08366]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16508]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16507]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7585]], docosahexaenoate biosynthesis II (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7585 PWY-7585]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14306 14306]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/O51363 O51363]
 +
** [http://www.uniprot.org/uniprot/O58734 O58734]
 +
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 +
** [http://www.uniprot.org/uniprot/P43830 P43830]
 +
** [http://www.uniprot.org/uniprot/P47525 P47525]
 +
** [http://www.uniprot.org/uniprot/O26708 O26708]
 +
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 +
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 +
** [http://www.uniprot.org/uniprot/P56124 P56124]
 +
** [http://www.uniprot.org/uniprot/O83195 O83195]
 +
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 +
** [http://www.uniprot.org/uniprot/O31755 O31755]
 +
** [http://www.uniprot.org/uniprot/P36431 P36431]
 +
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 +
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 +
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 +
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 +
** [http://www.uniprot.org/uniprot/P75382 P75382]
 +
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 +
** [http://www.uniprot.org/uniprot/P07814 P07814]
 +
** [http://www.uniprot.org/uniprot/P16659 P16659]
 +
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: ec-number=ec-2.3.1}}
+
{{#set: common-name=proline-trna ligase}}
−
{{#set: nb gene associated=0}}
+
{{#set: ec-number=ec-6.1.1.15}}
 +
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:30, 27 August 2019

Reaction PROLINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • proline-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=AIRS-RXN&oldid=35705"