Difference between revisions of "AIRS-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name:...")
(Created page with "Category:reaction == Reaction AIRS-RXN == * direction: ** left-to-right * common-name: ** phosphoribosylformylglycinamide cyclo-ligase * ec-number: ** [http://enzyme.expas...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROLINE--TRNA-LIGASE-RXN PROLINE--TRNA-LIGASE-RXN] ==
+
== Reaction AIRS-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** proline-trna ligase
+
** phosphoribosylformylglycinamide cyclo-ligase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15]
+
** [http://enzyme.expasy.org/EC/6.3.3.1 ec-6.3.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[5-PHOSPHORIBOSYL-N-FORMYLGLYCINEAMIDINE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08366]]
+
* Gene: [[SJ06408]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16508]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16507]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I:
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR139261
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14306 14306]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23033 23033]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04208 R04208]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/O51363 O51363]
+
** [http://www.uniprot.org/uniprot/P07244 P07244]
−
** [http://www.uniprot.org/uniprot/O58734 O58734]
+
** [http://www.uniprot.org/uniprot/P12043 P12043]
−
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
+
** [http://www.uniprot.org/uniprot/P21872 P21872]
−
** [http://www.uniprot.org/uniprot/P43830 P43830]
+
** [http://www.uniprot.org/uniprot/P08178 P08178]
−
** [http://www.uniprot.org/uniprot/P47525 P47525]
+
** [http://www.uniprot.org/uniprot/P00967 P00967]
−
** [http://www.uniprot.org/uniprot/O26708 O26708]
+
** [http://www.uniprot.org/uniprot/P16340 P16340]
−
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
+
** [http://www.uniprot.org/uniprot/P22102 P22102]
−
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
+
** [http://www.uniprot.org/uniprot/Q57656 Q57656]
−
** [http://www.uniprot.org/uniprot/P56124 P56124]
+
** [http://www.uniprot.org/uniprot/O66968 O66968]
−
** [http://www.uniprot.org/uniprot/O83195 O83195]
+
** [http://www.uniprot.org/uniprot/Q9JUA2 Q9JUA2]
−
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
+
** [http://www.uniprot.org/uniprot/P43848 P43848]
−
** [http://www.uniprot.org/uniprot/O31755 O31755]
+
** [http://www.uniprot.org/uniprot/Q9PME0 Q9PME0]
−
** [http://www.uniprot.org/uniprot/P36431 P36431]
+
** [http://www.uniprot.org/uniprot/Q64737 Q64737]
−
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
+
** [http://www.uniprot.org/uniprot/P20772 P20772]
−
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
+
** [http://www.uniprot.org/uniprot/Q55422 Q55422]
−
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
+
** [http://www.uniprot.org/uniprot/P52424 P52424]
−
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 
−
** [http://www.uniprot.org/uniprot/P75382 P75382]
 
−
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
 
−
** [http://www.uniprot.org/uniprot/P16659 P16659]
 
 
</div>
 
</div>
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=proline-trna ligase}}
+
{{#set: common-name=phosphoribosylformylglycinamide cyclo-ligase}}
−
{{#set: ec-number=ec-6.1.1.15}}
+
{{#set: ec-number=ec-6.3.3.1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction AIRS-RXN

  • direction:
    • left-to-right
  • common-name:
    • phosphoribosylformylglycinamide cyclo-ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II:
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=AIRS-RXN&oldid=139881"