Difference between revisions of "ALA-tRNAs"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROPORIIIMETHYLTRANSA-RXN UROPORIIIMETHYLTRANSA-RXN] == * direction: ** left-to-right * common-name...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9281 RXN-9281] == * direction: ** left-to-right * common-name: ** nonaprenyldihydroxybenzoate m...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROPORIIIMETHYLTRANSA-RXN UROPORIIIMETHYLTRANSA-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9281 RXN-9281] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** s-adenosyl-l-methionine:uroporphyrinogen-iii c-methyltransferase
+
** nonaprenyldihydroxybenzoate methyltransferase
 +
** polyprenyldihydroxybenzoate methyltransferase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.1.1.114 ec-2.1.1.114]
 
* synonymous:
 
* synonymous:
−
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
+
** 3-nonaprenyl-4,5-dihydroxybenzoate methyltransferase
−
** uroporphyrin-iii c-methyltransferase (incorrect)
 
−
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 
−
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 
−
** sira
 
−
** cysg
 
−
** uroporphyrinogen methyltransferase
 
−
** uroporphyrinogen-iii methyltransferase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[UROPORPHYRINOGEN-III]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-9038]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-9896]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-9898]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12313]]
+
* Gene: [[SJ13007]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
+
* [[PWY-5871]], ubiquinol-9 biosynthesis (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5871 PWY-5871]
−
** '''2''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
 
−
** '''4''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19090 19090]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=44489 44489]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07237 R07237]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=s-adenosyl-l-methionine:uroporphyrinogen-iii c-methyltransferase}}
+
{{#set: common-name=nonaprenyldihydroxybenzoate methyltransferase|polyprenyldihydroxybenzoate methyltransferase}}
−
{{#set: synonymous=sira|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|cysg|uroporphyrinogen methyltransferase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrin-iii c-methyltransferase (incorrect)|uroporphyrinogen-iii methyltransferase|adenosylmethionine-uroporphyrinogen iii methyltransferase}}
+
{{#set: ec-number=ec-2.1.1.114}}
 +
{{#set: synonymous=3-nonaprenyl-4,5-dihydroxybenzoate methyltransferase}}
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-9281

  • direction:
    • left-to-right
  • common-name:
    • nonaprenyldihydroxybenzoate methyltransferase
    • polyprenyldihydroxybenzoate methyltransferase
  • ec-number:
  • synonymous:
    • 3-nonaprenyl-4,5-dihydroxybenzoate methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5871, ubiquinol-9 biosynthesis (eukaryotic): PWY-5871
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links






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