Difference between revisions of "ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN"

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(Created page with "Category:reaction == Reaction DIAMINOPIMDECARB-RXN == * direction: ** left-to-right * common-name: ** diaminopimelate decarboxylase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.5 ec-1.2.1.5] == Reacti...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DIAMINOPIMDECARB-RXN ==
+
== Reaction ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
−
* common-name:
 
−
** diaminopimelate decarboxylase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
+
** [http://enzyme.expasy.org/EC/1.2.1.5 ec-1.2.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
* 1 [[Aldehydes]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[Carboxylates]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09103]]
+
* Gene: [[SJ06470]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ00674]]
+
* Gene: [[SJ06456]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21359]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2942]], L-lysine biosynthesis III:
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5097]], L-lysine biosynthesis VI:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2941]], L-lysine biosynthesis II:
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR115683
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
 
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
+
** [http://www.uniprot.org/uniprot/P30838 P30838]
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
+
** [http://www.uniprot.org/uniprot/P51647 P51647]
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
+
** [http://www.uniprot.org/uniprot/P47771 P47771]
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
+
{{#set: ec-number=ec-1.2.1.5}}
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
+
{{#set: nb pathway associated=0}}
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
+
{{#set: reconstruction category=orthology|annotation}}
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** [http://www.uniprot.org/uniprot/O27390 O27390]
 
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
 
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
 
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
 
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** [http://www.uniprot.org/uniprot/P09890 P09890]
 
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 
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** [http://www.uniprot.org/uniprot/O05321 O05321]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=diaminopimelate decarboxylase}}
 
−
{{#set: ec-number=ec-4.1.1.20}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:21, 18 March 2021

Reaction ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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