Difference between revisions of "ALGINATE-SYNTHASE-RXN"

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(Created page with "Category:reaction == Reaction RXN-10781 == * direction: ** left-to-right * common-name: ** 5-hydroxytryptophol dehydrogenase ** alcohol dehydrogenase (nad) ** 5-hydroxyind...")
(Created page with "Category:reaction == Reaction ALGINATE-SYNTHASE-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.33 ec-2.4.1.33] == Reaction formula...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction RXN-10781 ==
+
== Reaction ALGINATE-SYNTHASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 5-hydroxytryptophol dehydrogenase
 
−
** alcohol dehydrogenase (nad)
 
−
** 5-hydroxyindole acetaldehyde reductase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.1 ec-1.1.1.1]
+
** [http://enzyme.expasy.org/EC/2.4.1.33 ec-2.4.1.33]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-11671]][c] '''+''' 1 [[NAD]][c]
+
* n [[CPD-1828]][c] '''=>''' n [[GDP]][c] '''+''' n [[PROTON]][c] '''+''' 1 [[Poly-beta-D-Mannuronate]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ21601]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[SJ14768]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ07759]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6313]], serotonin degradation:
+
* [[PWY-6082]], alginate biosynthesis II (bacterial):
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** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6073]], alginate biosynthesis I (algal):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR115687
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03129 R03129]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=5-hydroxytryptophol dehydrogenase|alcohol dehydrogenase (nad)|5-hydroxyindole acetaldehyde reductase}}
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{{#set: ec-number=ec-2.4.1.33}}
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{{#set: ec-number=ec-1.1.1.1}}
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{{#set: nb gene associated=0}}
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{{#set: nb gene associated=3}}
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{{#set: nb pathway associated=2}}
−
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=gap-filling}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:19, 18 March 2021

Reaction ALGINATE-SYNTHASE-RXN

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6082, alginate biosynthesis II (bacterial):
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6073, alginate biosynthesis I (algal):
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR115687
  • LIGAND-RXN:





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