Difference between revisions of "AMCL"

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(Created page with "Category:reaction == Reaction RXN-8730 == * direction: ** left-to-right * common-name: ** inositol-polyphosphate 5-phosphatase ** inositol-1,3,4,5-tetrakisphosphate 5-phos...")
(Created page with "Category:reaction == Reaction AMCL == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine carboxy-lyase == Reaction formula == * 1.0 PROTON[c] '''+...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-8730 ==
+
== Reaction AMCL ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** inositol-polyphosphate 5-phosphatase
+
** s-adenosyl-l-methionine carboxy-lyase
** inositol-1,3,4,5-tetrakisphosphate 5-phosphatase
 
** inositol-1,4,5-trisphosphate 5-phosphatase
 
* ec-number:
 
** [http://enzyme.expasy.org/EC/3.1.3.56 ec-3.1.3.56]
 
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-506]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[INOSITOL-1-3-4-TRIPHOSPHATE]][c] '''+''' 1 [[Pi]][c]
+
* 1.0 [[PROTON]][c] '''+''' 1.0 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1.0 [[CARBON-DIOXIDE]][c] '''+''' 1.0 [[S-ADENOSYLMETHIONINAMINE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ03588]]
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* Gene: [[SJ07458]]
** Category: [[annotation]]
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** Category: [[orthology]]
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
* Gene: [[SJ11565]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ12333]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ20267]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6362]], 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian):
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
* [[PWY-6364]], D-myo-inositol (1,3,4)-trisphosphate biosynthesis:
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
* METANETX-RXN : MNXR108164
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11393 11393]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R03430 R03430]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=inositol-polyphosphate 5-phosphatase|inositol-1,4,5-trisphosphate 5-phosphatase|inositol-1,3,4,5-tetrakisphosphate 5-phosphatase}}
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{{#set: common-name=s-adenosyl-l-methionine carboxy-lyase}}
{{#set: ec-number=ec-3.1.3.56}}
+
{{#set: nb gene associated=1}}
{{#set: nb gene associated=4}}
+
{{#set: nb pathway associated=0}}
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction category=orthology}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph}}
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Latest revision as of 11:20, 18 March 2021

Reaction AMCL

  • direction:
    • left-to-right
  • common-name:
    • s-adenosyl-l-methionine carboxy-lyase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links