Difference between revisions of "AMP-DEPHOSPHORYLATION-RXN"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R-2-METHYLMALATE-DEHYDRATASE-RXN R-2-METHYLMALATE-DEHYDRATASE-RXN] == * direction: ** reversible *...")
(Created page with "Category:reaction == Reaction AMP-DEPHOSPHORYLATION-RXN == * direction: ** left-to-right * common-name: ** amp phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzym...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R-2-METHYLMALATE-DEHYDRATASE-RXN R-2-METHYLMALATE-DEHYDRATASE-RXN] ==
+
== Reaction AMP-DEPHOSPHORYLATION-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** (r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)
+
** amp phosphatase
 +
** 5'-nucleotidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.35 ec-4.2.1.35]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-31]][c] '''<=>''' 1 [[2-METHYLMALEATE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09771]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18895]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22396]]
+
* Gene: [[SJ15366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09030]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
+
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7698]], 2,5-xylenol and 3,5-xylenol degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7698 PWY-7698]
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR102037
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22332 22332]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29376 29376]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03896 R03896]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
−
{{#set: direction=reversible}}
+
* UNIPROT:
−
{{#set: common-name=(r)-2-methylmalate hydro-lyase (2-methylmaleate-forming)}}
+
** [http://www.uniprot.org/uniprot/P06196 P06196]
−
{{#set: ec-number=ec-4.2.1.35}}
+
** [http://www.uniprot.org/uniprot/P21588 P21588]
−
{{#set: nb gene associated=2}}
+
** [http://www.uniprot.org/uniprot/O34313 O34313]
−
{{#set: nb pathway associated=2}}
+
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/O29385 O29385]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P44569 P44569]
 +
** [http://www.uniprot.org/uniprot/O83142 O83142]
 +
** [http://www.uniprot.org/uniprot/P49902 P49902]
 +
** [http://www.uniprot.org/uniprot/P22848 P22848]
 +
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
 +
** [http://www.uniprot.org/uniprot/P21589 P21589]
 +
** [http://www.uniprot.org/uniprot/P29240 P29240]
 +
** [http://www.uniprot.org/uniprot/P07024 P07024]
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=5'-nucleotidase|amp phosphatase}}
 +
{{#set: ec-number=ec-3.1.3.5}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction AMP-DEPHOSPHORYLATION-RXN

  • direction:
    • left-to-right
  • common-name:
    • amp phosphatase
    • 5'-nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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