Difference between revisions of "AMP-DEPHOSPHORYLATION-RXN"

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(Created page with "Category:reaction == Reaction S-ADENMETSYN-RXN == * direction: ** left-to-right * common-name: ** methionine adenosyltransferase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction AMP-DEPHOSPHORYLATION-RXN == * direction: ** left-to-right * common-name: ** amp phosphatase ** 5'-nucleotidase * ec-number: ** [http://enzym...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction S-ADENMETSYN-RXN ==
+
== Reaction AMP-DEPHOSPHORYLATION-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** methionine adenosyltransferase
+
** amp phosphatase
 +
** 5'-nucleotidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.6 ec-2.5.1.6]
+
** [http://enzyme.expasy.org/EC/3.1.3.5 ec-3.1.3.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[MET]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ07891]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ18895]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15366]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ09030]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18402]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ16098]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ETHYL-PWY]], ethylene biosynthesis I (plants):
+
* [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine):
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis:
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5041]], S-adenosyl-L-methionine cycle II:
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR102037
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21081 21081]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29376 29376]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00183 R00183]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19358 P19358]
+
** [http://www.uniprot.org/uniprot/P06196 P06196]
−
** [http://www.uniprot.org/uniprot/P18298 P18298]
+
** [http://www.uniprot.org/uniprot/P21588 P21588]
−
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
+
** [http://www.uniprot.org/uniprot/O34313 O34313]
−
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
+
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
−
** [http://www.uniprot.org/uniprot/P54419 P54419]
+
** [http://www.uniprot.org/uniprot/O29385 O29385]
−
** [http://www.uniprot.org/uniprot/P56460 P56460]
+
** [http://www.uniprot.org/uniprot/P44569 P44569]
−
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
+
** [http://www.uniprot.org/uniprot/O83142 O83142]
−
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
+
** [http://www.uniprot.org/uniprot/P49902 P49902]
−
** [http://www.uniprot.org/uniprot/O50163 O50163]
+
** [http://www.uniprot.org/uniprot/P22848 P22848]
−
** [http://www.uniprot.org/uniprot/P43762 P43762]
+
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
−
** [http://www.uniprot.org/uniprot/P23686 P23686]
+
** [http://www.uniprot.org/uniprot/P21589 P21589]
−
** [http://www.uniprot.org/uniprot/P17562 P17562]
+
** [http://www.uniprot.org/uniprot/P29240 P29240]
−
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
+
** [http://www.uniprot.org/uniprot/P07024 P07024]
−
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
 
−
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
 
−
** [http://www.uniprot.org/uniprot/P13444 P13444]
 
−
** [http://www.uniprot.org/uniprot/P31153 P31153]
 
−
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
 
−
** [http://www.uniprot.org/uniprot/P43281 P43281]
 
−
** [http://www.uniprot.org/uniprot/P40320 P40320]
 
−
** [http://www.uniprot.org/uniprot/P43280 P43280]
 
−
** [http://www.uniprot.org/uniprot/P43282 P43282]
 
−
** [http://www.uniprot.org/uniprot/P48498 P48498]
 
−
** [http://www.uniprot.org/uniprot/P10659 P10659]
 
−
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
 
−
** [http://www.uniprot.org/uniprot/P48466 P48466]
 
−
** [http://www.uniprot.org/uniprot/P49612 P49612]
 
−
** [http://www.uniprot.org/uniprot/P49613 P49613]
 
−
** [http://www.uniprot.org/uniprot/P78003 P78003]
 
−
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
 
−
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
 
−
** [http://www.uniprot.org/uniprot/P50299 P50299]
 
−
** [http://www.uniprot.org/uniprot/O22350 O22350]
 
−
** [http://www.uniprot.org/uniprot/P24260 P24260]
 
−
** [http://www.uniprot.org/uniprot/O60198 O60198]
 
−
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=methionine adenosyltransferase}}
+
{{#set: common-name=5'-nucleotidase|amp phosphatase}}
−
{{#set: ec-number=ec-2.5.1.6}}
+
{{#set: ec-number=ec-3.1.3.5}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction AMP-DEPHOSPHORYLATION-RXN

  • direction:
    • left-to-right
  • common-name:
    • amp phosphatase
    • 5'-nucleotidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • SALVADEHYPOX-PWY, adenosine nucleotides degradation II:
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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