Difference between revisions of "AMPSYN-RXN"

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(Created page with "Category:reaction == Reaction 1.1.1.39-RXN == * direction: ** left-to-right * common-name: ** malate dehydrogenase (decarboxylating) (nad+) ** oxaloacetate decarboxylase *...")
(Created page with "Category:reaction == Reaction AMPSYN-RXN == * direction: ** reversible * common-name: ** adenylosuccinate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 1.1.1.39-RXN ==
+
== Reaction AMPSYN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** malate dehydrogenase (decarboxylating) (nad+)
+
** adenylosuccinate lyase
−
** oxaloacetate decarboxylase
 
−
** malate dehydrogenase, nad-requiring
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.38 ec-1.1.1.38]
+
** [http://enzyme.expasy.org/EC/4.3.2.2 ec-4.3.2.2]
−
** [http://enzyme.expasy.org/EC/1.1.1.39 ec-1.1.1.39]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PYRUVATE]][c]
+
* 1 [[ADENYLOSUCC]][c] '''<=>''' 1 [[AMP]][c] '''+''' 1 [[FUM]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14191]]
+
* Gene: [[SJ06544]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11643]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7118]], chitin degradation to ethanol:
+
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7686]], L-malate degradation II:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-3641]], L-carnitine degradation III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial):
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR95493
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12654 12654]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16856 16856]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01083 R01083]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q48662 Q48662]
+
** [http://www.uniprot.org/uniprot/P21265 P21265]
−
** [http://www.uniprot.org/uniprot/Q9PN12 Q9PN12]
+
** [http://www.uniprot.org/uniprot/Q58339 Q58339]
−
** [http://www.uniprot.org/uniprot/O59029 O59029]
+
** [http://www.uniprot.org/uniprot/Q9CF40 Q9CF40]
−
** [http://www.uniprot.org/uniprot/P16468 P16468]
+
** [http://www.uniprot.org/uniprot/Q9PJ88 Q9PJ88]
−
** [http://www.uniprot.org/uniprot/Q9CGB2 Q9CGB2]
+
** [http://www.uniprot.org/uniprot/Q9JSP3 Q9JSP3]
−
** [http://www.uniprot.org/uniprot/P26616 P26616]
+
** [http://www.uniprot.org/uniprot/P0AB89 P0AB89]
−
** [http://www.uniprot.org/uniprot/Q9JVE6 Q9JVE6]
+
** [http://www.uniprot.org/uniprot/O65180 O65180]
−
** [http://www.uniprot.org/uniprot/P37224 P37224]
+
** [http://www.uniprot.org/uniprot/P12047 P12047]
−
** [http://www.uniprot.org/uniprot/P37225 P37225]
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/P37221 P37221]
+
{{#set: common-name=adenylosuccinate lyase}}
−
** [http://www.uniprot.org/uniprot/Q7M1T9 Q7M1T9]
+
{{#set: ec-number=ec-4.3.2.2}}
−
** [http://www.uniprot.org/uniprot/Q9M162 Q9M162]
+
{{#set: nb gene associated=1}}
−
* LIGAND-RXN:
+
{{#set: nb pathway associated=1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00214 R00214]
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=malate dehydrogenase, nad-requiring|malate dehydrogenase (decarboxylating) (nad+)|oxaloacetate decarboxylase}}
 
−
{{#set: ec-number=ec-1.1.1.38|ec-1.1.1.39}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=6}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:22, 18 March 2021

Reaction AMPSYN-RXN

  • direction:
    • reversible
  • common-name:
    • adenylosuccinate lyase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7219, adenosine ribonucleotides de novo biosynthesis:
    • 4 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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