Difference between revisions of "APIGNAR-RXN"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN == * direction: ** left-to-right * common-name: ** gdp-mannose 6-dehydrogenase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction RXN0-5330 == * direction: ** left-to-right * common-name: ** nadh:ubiquinone oxidoreductase ** nadh dehydrogenase (ubiquinone) * ec-number: *...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction GDP-MANNOSE-6-DEHYDROGENASE-RXN ==
+
== Reaction RXN0-5330 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** gdp-mannose 6-dehydrogenase
+
** nadh:ubiquinone oxidoreductase
 +
** nadh dehydrogenase (ubiquinone)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.132 ec-1.1.1.132]
+
** [http://enzyme.expasy.org/EC/1.6.5.9 ec-1.6.5.9]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-MANNOSE]][c] '''+''' 2 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1828]][c] '''+''' 2 [[NADH]][c] '''+''' 3 [[PROTON]][c]
+
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Ubiquinones]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Ubiquinols]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11033]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ21895]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ15450]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ22333]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ03911]]
+
* Gene: [[SJ19412]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15310]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10422]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11024]]
+
* Gene: [[SJ02471]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03600]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ21333]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ14995]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ05715]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ09960]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ16410]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ21017]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6073]], alginate biosynthesis I (algal):
+
* [[PWY-7279]], aerobic respiration II (cytochrome c) (yeast):
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6082]], alginate biosynthesis II (bacterial):
+
* [[PWY0-1573]], nitrate reduction VIIIb (dissimilatory):
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7269]], NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY0-1568]], NADH to cytochrome bd oxidase electron transfer II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1567]], NADH to cytochrome bo oxidase electron transfer II:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21731 21731]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23153 23153]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00880 R00880]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P11759 P11759]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gdp-mannose 6-dehydrogenase}}
+
{{#set: common-name=nadh dehydrogenase (ubiquinone)|nadh:ubiquinone oxidoreductase}}
−
{{#set: ec-number=ec-1.1.1.132}}
+
{{#set: ec-number=ec-1.6.5.9}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=14}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=5}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:08, 5 January 2021

Reaction RXN0-5330

  • direction:
    • left-to-right
  • common-name:
    • nadh:ubiquinone oxidoreductase
    • nadh dehydrogenase (ubiquinone)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7279, aerobic respiration II (cytochrome c) (yeast):
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-1573, nitrate reduction VIIIb (dissimilatory):
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7269, NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY0-1568, NADH to cytochrome bd oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1567, NADH to cytochrome bo oxidase electron transfer II:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=APIGNAR-RXN&oldid=64885"