Difference between revisions of "APIGNAR-RXN"
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(Created page with "Category:reaction == Reaction LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN == * direction: ** left-to-right * common-name: ** acyl-coa dehydrogenase * ec-number: ** [http://enz...") |
(Created page with "Category:reaction == Reaction APIGNAR-RXN == * direction: ** left-to-right * common-name: ** naringenin chalcone isomerase ** chalcone isomerase * ec-number: ** [http://en...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction APIGNAR-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** naringenin chalcone isomerase |
+ | ** chalcone isomerase | ||
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ09285]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | * Gene: [[ | + | * Gene: [[SJ20427]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
− | |||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY1F-FLAVSYN]], flavonoid biosynthesis: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY-6787]], flavonoid biosynthesis (in equisetum): | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[PWY-7397]], naringenin biosynthesis (engineered): | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7897]], flavonoid di-C-glucosylation: | ||
+ | ** '''3''' reactions found over '''15''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
− | * METANETX-RXN : | + | * METANETX-RXN : MNXR107511 |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446] |
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P11650 P11650] |
+ | ** [http://www.uniprot.org/uniprot/P11651 P11651] | ||
+ | ** [http://www.uniprot.org/uniprot/P41088 P41088] | ||
+ | ** [http://www.uniprot.org/uniprot/P14298 P14298] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42925 Q42925] | ||
+ | ** [http://www.uniprot.org/uniprot/Q42926 Q42926] | ||
+ | ** [http://www.uniprot.org/uniprot/Q08704 Q08704] | ||
+ | ** [http://www.uniprot.org/uniprot/P28012 P28012] | ||
+ | ** [http://www.uniprot.org/uniprot/P41089 P41089] | ||
+ | ** [http://www.uniprot.org/uniprot/O81980 O81980] | ||
+ | ** [http://www.uniprot.org/uniprot/O22604 O22604] | ||
+ | ** [http://www.uniprot.org/uniprot/O22651 O22651] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43754 Q43754] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=naringenin chalcone isomerase|chalcone isomerase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-5.5.1.6}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=2}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction tool=pantograph | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Latest revision as of 11:25, 18 March 2021
Contents
Reaction APIGNAR-RXN
- direction:
- left-to-right
- common-name:
- naringenin chalcone isomerase
- chalcone isomerase
- ec-number:
Reaction formula
- 1 CPD-20012[c] => 1 NARINGENIN-CMPD[c]
Gene(s) associated with this reaction
- Gene: SJ09285
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ20427
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY1F-FLAVSYN, flavonoid biosynthesis:
- 5 reactions found over 5 reactions in the full pathway
- PWY-6787, flavonoid biosynthesis (in equisetum):
- 6 reactions found over 10 reactions in the full pathway
- PWY-7397, naringenin biosynthesis (engineered):
- 3 reactions found over 4 reactions in the full pathway
- PWY-7897, flavonoid di-C-glucosylation:
- 3 reactions found over 15 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
- METANETX-RXN : MNXR107511
- LIGAND-RXN:
- UNIPROT: