Difference between revisions of "APYRASE-RXN"

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(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** 3-dehydroquinate synthase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction APYRASE-RXN == * direction: ** left-to-right * common-name: ** adenosine-diphosphatase ** nucleoside-triphosphatase * ec-number: ** [http://e...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-DEHYDROQUINATE-SYNTHASE-RXN ==
+
== Reaction APYRASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-dehydroquinate synthase
+
** adenosine-diphosphatase
 +
** nucleoside-triphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.3.4 ec-4.2.3.4]
+
** [http://enzyme.expasy.org/EC/3.6.1.5 ec-3.6.1.5]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''=>''' 1 [[DEHYDROQUINATE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[ATP]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10493]]
+
* Gene: [[SJ16444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03966]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ10220]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15385]]
+
* Gene: [[SJ00842]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6164]], 3-dehydroquinate biosynthesis I:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* METANETX-RXN : MNXR96128
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21969 21969]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20988 20988]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03083 R03083]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00085 R00085]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/P80595 P80595]
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
 
−
** [http://www.uniprot.org/uniprot/Q9CES8 Q9CES8]
 
−
** [http://www.uniprot.org/uniprot/Q9PNT2 Q9PNT2]
 
−
** [http://www.uniprot.org/uniprot/P43879 P43879]
 
−
** [http://www.uniprot.org/uniprot/Q9JVW5 Q9JVW5]
 
−
** [http://www.uniprot.org/uniprot/P0A4Z4 P0A4Z4]
 
−
** [http://www.uniprot.org/uniprot/P07639 P07639]
 
−
** [http://www.uniprot.org/uniprot/Q9P7R0 Q9P7R0]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-dehydroquinate synthase}}
+
{{#set: common-name=adenosine-diphosphatase|nucleoside-triphosphatase}}
−
{{#set: ec-number=ec-4.2.3.4}}
+
{{#set: ec-number=ec-3.6.1.5}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction APYRASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • adenosine-diphosphatase
    • nucleoside-triphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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