Difference between revisions of "APYRASE-RXN"

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(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-SYNTHASE-RXN == * direction: ** left-to-right * common-name: ** 3-dehydroquinate synthase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction RXN-14273 == * direction: ** left-to-right * common-name: ** trans-tetradec-2-enoyl-coa hydratase ** enoyl-coa hydratase * ec-number: ** [htt...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 3-DEHYDROQUINATE-SYNTHASE-RXN ==
+
== Reaction RXN-14273 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 3-dehydroquinate synthase
+
** trans-tetradec-2-enoyl-coa hydratase
 +
** enoyl-coa hydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.3.4 ec-4.2.3.4]
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[3-DEOXY-D-ARABINO-HEPTULOSONATE-7-P]][c] '''=>''' 1 [[DEHYDROQUINATE]][c] '''+''' 1 [[Pi]][c]
+
* 1 [[CPD-15568]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD0-2171]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ10493]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ00040]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07211]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ03966]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21390]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10220]]
+
* Gene: [[SJ10275]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ15385]]
+
* Gene: [[SJ03584]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ03913]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6164]], 3-dehydroquinate biosynthesis I:
+
* [[PWY-7654]], (8E,10E)-dodeca-8,10-dienol biosynthesis:
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 38: Line 51:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21969 21969]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31173 31173]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03083 R03083]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04740 R04740]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P07547 P07547]
 
−
** [http://www.uniprot.org/uniprot/P08566 P08566]
 
−
** [http://www.uniprot.org/uniprot/Q9CES8 Q9CES8]
 
−
** [http://www.uniprot.org/uniprot/Q9PNT2 Q9PNT2]
 
−
** [http://www.uniprot.org/uniprot/P43879 P43879]
 
−
** [http://www.uniprot.org/uniprot/Q9JVW5 Q9JVW5]
 
−
** [http://www.uniprot.org/uniprot/P0A4Z4 P0A4Z4]
 
−
** [http://www.uniprot.org/uniprot/P07639 P07639]
 
−
** [http://www.uniprot.org/uniprot/Q9P7R0 Q9P7R0]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=3-dehydroquinate synthase}}
+
{{#set: common-name=enoyl-coa hydratase|trans-tetradec-2-enoyl-coa hydratase}}
−
{{#set: ec-number=ec-4.2.3.4}}
+
{{#set: ec-number=ec-4.2.1.17}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=7}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:01, 5 January 2021

Reaction RXN-14273

  • direction:
    • left-to-right
  • common-name:
    • trans-tetradec-2-enoyl-coa hydratase
    • enoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7654, (8E,10E)-dodeca-8,10-dienol biosynthesis:
    • 5 reactions found over 11 reactions in the full pathway

Reconstruction information

External links





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