Difference between revisions of "ARGDECARBOX-RXN"

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(Created page with "Category:reaction == Reaction DCTP-PYROPHOSPHATASE-RXN == * direction: ** left-to-right * common-name: ** nucleotide diphosphatase ** dctp pyrophosphohydrolase * ec-number...")
(Created page with "Category:reaction == Reaction ARGDECARBOX-RXN == * direction: ** reversible * common-name: ** arginine decarboxylase, biosynthetic * ec-number: ** [http://enzyme.expasy.or...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction DCTP-PYROPHOSPHATASE-RXN ==
+
== Reaction ARGDECARBOX-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** nucleotide diphosphatase
+
** arginine decarboxylase, biosynthetic
−
** dctp pyrophosphohydrolase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
+
** [http://enzyme.expasy.org/EC/4.1.1.19 ec-4.1.1.19]
−
** [http://enzyme.expasy.org/EC/3.6.1.12 ec-3.6.1.12]
 
−
** [http://enzyme.expasy.org/EC/3.6.1.65 ec-3.6.1.65]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DCTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DCMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ARG]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AGMATHINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ12405]]
−
* Gene: [[SJ08856]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19893]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22529]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07337]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04934]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08998]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ12166]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19894]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06814]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
+
* [[PWY-6305]], superpathway of putrescine biosynthesis:
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY0-1299]], arginine dependent acid resistance:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-40]], putrescine biosynthesis I:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6834]], spermidine biosynthesis III:
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[ARGDEG-III-PWY]], L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-43]], putrescine biosynthesis II:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* METANETX-RXN : MNXR95940
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22637 22637]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17644 17644]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01668 R01668]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00566 R00566]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P39262 P39262]
+
** [http://www.uniprot.org/uniprot/P21170 P21170]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9PPF5 Q9PPF5]
−
{{#set: common-name=dctp pyrophosphohydrolase|nucleotide diphosphatase}}
+
** [http://www.uniprot.org/uniprot/Q9JT25 Q9JT25]
−
{{#set: ec-number=ec-3.6.1.12|ec-3.6.1.9|ec-3.6.1.65}}
+
** [http://www.uniprot.org/uniprot/P49726 P49726]
−
{{#set: nb gene associated=9}}
+
** [http://www.uniprot.org/uniprot/P22220 P22220]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/P28629 P28629]
 +
** [http://www.uniprot.org/uniprot/Q43075 Q43075]
 +
** [http://www.uniprot.org/uniprot/Q9SI64 Q9SI64]
 +
** [http://www.uniprot.org/uniprot/P72587 P72587]
 +
** [http://www.uniprot.org/uniprot/P74576 P74576]
 +
** [http://www.uniprot.org/uniprot/O24128 O24128]
 +
** [http://www.uniprot.org/uniprot/O23141 O23141]
 +
** [http://www.uniprot.org/uniprot/Q39827 Q39827]
 +
** [http://www.uniprot.org/uniprot/O81161 O81161]
 +
** [http://www.uniprot.org/uniprot/O04429 O04429]
 +
** [http://www.uniprot.org/uniprot/Q96412 Q96412]
 +
** [http://www.uniprot.org/uniprot/O81177 O81177]
 +
** [http://www.uniprot.org/uniprot/O64453 O64453]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=arginine decarboxylase, biosynthetic}}
 +
{{#set: ec-number=ec-4.1.1.19}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=7}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:18, 18 March 2021

Reaction ARGDECARBOX-RXN

  • direction:
    • reversible
  • common-name:
    • arginine decarboxylase, biosynthetic
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6305, superpathway of putrescine biosynthesis:
    • 4 reactions found over n.a reactions in the full pathway
  • PWY0-1299, arginine dependent acid resistance:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6834, spermidine biosynthesis III:
    • 2 reactions found over 4 reactions in the full pathway
  • ARGDEG-III-PWY, L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway):
    • 3 reactions found over 3 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway):
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-43, putrescine biosynthesis II:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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