Difference between revisions of "ARGSUCCINLYA-RXN"
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(Created page with "Category:reaction == Reaction RXN-10917 == * direction: ** left-to-right * common-name: ** aldehyde dehydrogenase (nad) ** 3-methoxy-4-hydroxyphenylglycolaldehyde dehydrog...") |
(Created page with "Category:reaction == Reaction ARGSUCCINLYA-RXN == * direction: ** reversible * common-name: ** argininosuccinate lyase * ec-number: ** [http://enzyme.expasy.org/EC/4.3.2.1...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction RXN | + | == Reaction ARGSUCCINLYA-RXN == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
* common-name: | * common-name: | ||
− | ** | + | ** argininosuccinate lyase |
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* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.3.2.1 ec-4.3.2.1] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[L-ARGININO-SUCCINATE]][c] '''<=>''' 1 [[ARG]][c] '''+''' 1 [[FUM]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | + | * Gene: [[SJ20639]] | |
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− | * Gene: [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | + | ** Category: [[orthology]] | |
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): |
− | ** '''8''' reactions found over ''' | + | ** '''5''' reactions found over '''4''' reactions in the full pathway |
+ | * [[PWY-4983]], nitric oxide biosynthesis II (mammals): | ||
+ | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7400]], L-arginine biosynthesis IV (archaea): | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-4984]], urea cycle: | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * METANETX-RXN : MNXR138059 | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24023 24023] | ||
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01086 R01086] |
− | {{#set: direction= | + | * UNIPROT: |
− | {{#set: common-name= | + | ** [http://www.uniprot.org/uniprot/P50987 P50987] |
− | {{#set: ec-number=ec- | + | ** [http://www.uniprot.org/uniprot/Q46104 Q46104] |
− | {{#set: nb gene associated= | + | ** [http://www.uniprot.org/uniprot/P11447 P11447] |
− | {{#set: nb pathway associated= | + | ** [http://www.uniprot.org/uniprot/Q9JVG7 Q9JVG7] |
− | {{#set: reconstruction category=annotation}} | + | ** [http://www.uniprot.org/uniprot/Q9CJ76 Q9CJ76] |
− | {{#set: reconstruction tool=pathwaytools}} | + | ** [http://www.uniprot.org/uniprot/P44314 P44314] |
+ | ** [http://www.uniprot.org/uniprot/Q58201 Q58201] | ||
+ | ** [http://www.uniprot.org/uniprot/P33110 P33110] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01592 Q01592] | ||
+ | ** [http://www.uniprot.org/uniprot/P40369 P40369] | ||
+ | ** [http://www.uniprot.org/uniprot/P50988 P50988] | ||
+ | ** [http://www.uniprot.org/uniprot/P73257 P73257] | ||
+ | ** [http://www.uniprot.org/uniprot/P50514 P50514] | ||
+ | ** [http://www.uniprot.org/uniprot/P04076 P04076] | ||
+ | ** [http://www.uniprot.org/uniprot/P04424 P04424] | ||
+ | ** [http://www.uniprot.org/uniprot/P20673 P20673] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=argininosuccinate lyase}} | ||
+ | {{#set: ec-number=ec-4.3.2.1}} | ||
+ | {{#set: nb gene associated=1}} | ||
+ | {{#set: nb pathway associated=6}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:25, 18 March 2021
Contents
Reaction ARGSUCCINLYA-RXN
- direction:
- reversible
- common-name:
- argininosuccinate lyase
- ec-number:
Reaction formula
- 1 L-ARGININO-SUCCINATE[c] <=> 1 ARG[c] + 1 FUM[c]
Gene(s) associated with this reaction
- Gene: SJ20639
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine):
- 5 reactions found over 4 reactions in the full pathway
- PWY-4983, nitric oxide biosynthesis II (mammals):
- 3 reactions found over 3 reactions in the full pathway
- PWY-7400, L-arginine biosynthesis IV (archaea):
- 7 reactions found over 9 reactions in the full pathway
- PWY-4984, urea cycle:
- 5 reactions found over 5 reactions in the full pathway
- ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle):
- 9 reactions found over 9 reactions in the full pathway
- PWY-5154, L-arginine biosynthesis III (via N-acetyl-L-citrulline):
- 8 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links