Difference between revisions of "ARPT"
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(Created page with "Category:reaction == Reaction RXN-15635 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2.11 ec-2.1.2.11] == Reaction formula == * 1 2-...") |
(Created page with "Category:reaction == Reaction RXN-12398 == * direction: ** left-to-right * common-name: ** xyloglucan xxlg oligosaccharide β-galactosidase ** beta-galactosidase ** xx...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction RXN- | + | == Reaction RXN-12398 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** xyloglucan xxlg oligosaccharide β-galactosidase | ||
| + | ** beta-galactosidase | ||
| + | ** xxlg xyloglucan oligosaccharide β-galactosidase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/2.1. | + | ** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[CPD-13376]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ04558]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
| + | * Gene: [[SJ14193]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a | ||
| + | * Gene: [[SJ03139]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ10277]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| Line 14: | Line 29: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY-6807]], xyloglucan degradation II (exoglucanase): |
| − | ** ''' | + | ** '''3''' reactions found over '''8''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| Line 21: | Line 36: | ||
== External links == | == External links == | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec-2.1. | + | {{#set: common-name=xxlg xyloglucan oligosaccharide β-galactosidase|xyloglucan xxlg oligosaccharide β-galactosidase|beta-galactosidase}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-3.2.1.23}} |
| + | {{#set: nb gene associated=4}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
| − | {{#set: reconstruction tool=pantograph | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | ||
Revision as of 15:00, 5 January 2021
Contents
Reaction RXN-12398
- direction:
- left-to-right
- common-name:
- xyloglucan xxlg oligosaccharide β-galactosidase
- beta-galactosidase
- xxlg xyloglucan oligosaccharide β-galactosidase
- ec-number:
Reaction formula
- 1 CPD-13376[c] + 1 WATER[c] => 1 CPD-13375[c] + 1 D-galactopyranose[c]
Gene(s) associated with this reaction
- Gene: SJ04558
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ14193
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: go-term, Comment: n.a
- Category: annotation
- Gene: SJ03139
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ10277
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6807, xyloglucan degradation II (exoglucanase):
- 3 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
