Difference between revisions of "ASPARAGINE--TRNA-LIGASE-RXN"

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(Created page with "Category:reaction == Reaction METHYLENETHFDEHYDROG-NADP-RXN == * direction: ** reversible * common-name: ** methylenetetrahydrofolate dehydrogenase (nadp+) ** methylenetet...")
(Created page with "Category:reaction == Reaction ASPARAGINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** asparagine-trna ligase * ec-number: ** [http://enzyme.expasy.o...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHYLENETHFDEHYDROG-NADP-RXN ==
+
== Reaction ASPARAGINE--TRNA-LIGASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** methylenetetrahydrofolate dehydrogenase (nadp+)
+
** asparagine-trna ligase
−
** methylenetetrahydrofolate dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.5.1.5 ec-1.5.1.5]
+
** [http://enzyme.expasy.org/EC/6.1.1.22 ec-6.1.1.22]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[NADPH]][c]
+
* 1 [[ASN]][c] '''+''' 1 [[ASN-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ASN-tRNAs]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ20233]]
−
* Gene: [[SJ12991]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02922]]
+
* Gene: [[SJ18954]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ10799]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17385]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11954]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02262]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
+
* [[TRNA-CHARGING-PWY]], tRNA charging:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22815 22815]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11181 11181]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03648 R03648]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
+
** [http://www.uniprot.org/uniprot/P39772 P39772]
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
** [http://www.uniprot.org/uniprot/O57980 O57980]
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
** [http://www.uniprot.org/uniprot/Q9V251 Q9V251]
−
** [http://www.uniprot.org/uniprot/P44313 P44313]
+
** [http://www.uniprot.org/uniprot/Q9CEK9 Q9CEK9]
−
** [http://www.uniprot.org/uniprot/P47259 P47259]
+
** [http://www.uniprot.org/uniprot/P47359 P47359]
−
** [http://www.uniprot.org/uniprot/P54382 P54382]
+
** [http://www.uniprot.org/uniprot/O51128 O51128]
−
** [http://www.uniprot.org/uniprot/O67736 O67736]
+
** [http://www.uniprot.org/uniprot/O83618 O83618]
−
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
+
** [http://www.uniprot.org/uniprot/O58008 O58008]
−
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
+
** [http://www.uniprot.org/uniprot/O96198 O96198]
−
** [http://www.uniprot.org/uniprot/P24186 P24186]
+
** [http://www.uniprot.org/uniprot/P54262 P54262]
−
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
+
** [http://www.uniprot.org/uniprot/P75521 P75521]
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
+
** [http://www.uniprot.org/uniprot/Q48966 Q48966]
−
** [http://www.uniprot.org/uniprot/P51696 P51696]
+
** [http://www.uniprot.org/uniprot/P0A8M0 P0A8M0]
−
** [http://www.uniprot.org/uniprot/O65269 O65269]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/O65271 O65271]
+
{{#set: common-name=asparagine-trna ligase}}
−
** [http://www.uniprot.org/uniprot/O68031 O68031]
+
{{#set: ec-number=ec-6.1.1.22}}
−
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
+
{{#set: nb pathway associated=1}}
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=methylenetetrahydrofolate dehydrogenase|methylenetetrahydrofolate dehydrogenase (nadp+)}}
 
−
{{#set: ec-number=ec-1.5.1.5}}
 
−
{{#set: nb gene associated=6}}
 
−
{{#set: nb pathway associated=7}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 11:26, 15 January 2021

Reaction ASPARAGINE--TRNA-LIGASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • asparagine-trna ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • TRNA-CHARGING-PWY, tRNA charging:
    • 21 reactions found over 21 reactions in the full pathway

Reconstruction information

External links





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